Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02546 ATGTGTCCTTCTGGCAGGAGCCTCCGCACAACTGCCTCCTCCGGTTTCCGACCAGCCTTCGACATCCTCGACGCTGACCACGACGGAAAGATCAGCCGCGAGGACCTCCGCGCCTTCTACTCCTCCGTCTACGGCCGCGGAGAAGATGACGTCATCGGTGCAATGATGACGGTTGCCGACACCAACAAGGACGGCTTCGTGGAGTACGAGGAGTTCGAGCGCGTTCTCTCTGCCGTGGGAAACACCGAGAGGTGCGGCACCTCGAGACCGGTGGGGTGTGGAGCCATCGAGGATGTGTTCAGGGTCATGGACAGAGACGGCGACGGCAAGCTCAGCCACCGTGACCTCAAGGTATACATGGAATCCGCCGGATTCTCCGCCACCGACGACGATATCGCCGCCATGATACAGTTCGGCGGTGGAGACCAGAACGGCGGCGTAACCTTCGATGGCTTGCTTCGTATATTAGCTCTTGATTGTGCTCCGCATAATTAccgcgcctccccaGCCCTTCCCAGCCCTGCCTCCCACTCTCCCATCACCTCACAGCCCCACCTAGTCCCGCCGATCCAGCCCCTCCCAGTCTCCCCGAACCATAGCCTCGTAGCCCCTCCCAGCAGCGCCGAGCAGTGCCGTGCTGTGCCGGACCAGCCACCCATCAGCGATGTTCAACCGTTCCTGGCAGCGCGAACCAGTGAACCCAACCCCTCCCAGCAGCGCCGAACCTGCGCCTCCCAGCCCCTCCCAGCACCTCTGTTCTATGTATTATCTATTTGTTGTTGA 783 0.599 MCPSGRSLRTTASSGFRPAFDILDADHDGKISREDLRAFYSSVYGRGEDDVIGAMMTVADTNKDGFVEYEEFERVLSAVGNTERCGTSRPVGCGAIEDVFRVMDRDGDGKLSHRDLKVYMESAGFSATDDDIAAMIQFGGGDQNGGVTFDGLLRILALDCAPHNYRASPALPSPASHSPITSQPHLVPPIQPLPVSPNHSLVAPPSSAEQCRAVPDQPPISDVQPFLAARTSEPNPSQQRRTCASQPLPAPLFYVLSICC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02546 260 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Adu01g02546 260 ProSiteProfiles EF-hand calcium-binding domain profile. 19 46 IPR002048 GO:0005509
Adu01g02546 260 ProSitePatterns EF-hand calcium-binding domain. 104 116 IPR018247 -
Adu01g02546 260 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 160 - -
Adu01g02546 260 MobiDBLite consensus disorder prediction 169 216 - -
Adu01g02546 260 ProSitePatterns EF-hand calcium-binding domain. 24 36 IPR018247 -
Adu01g02546 260 CDD EFh 16 72 IPR002048 GO:0005509
Adu01g02546 260 PANTHER CALCIUM BINDING PROTEIN 1 160 - -
Adu01g02546 260 CDD EFh 96 157 IPR002048 GO:0005509
Adu01g02546 260 ProSitePatterns EF-hand calcium-binding domain. 60 72 IPR018247 -
Adu01g02546 260 MobiDBLite consensus disorder prediction 185 199 - -
Adu01g02546 260 SUPERFAMILY EF-hand 15 157 IPR011992 -
Adu01g02546 260 Pfam EF hand 96 117 IPR002048 GO:0005509
Adu01g02546 260 Pfam EF-hand domain pair 17 75 IPR002048 GO:0005509
Adu01g02546 260 Gene3D - 6 161 - -
Adu01g02546 260 ProSiteProfiles EF-hand calcium-binding domain profile. 96 126 IPR002048 GO:0005509
Adu01g02546 260 SMART efh_1 95 123 IPR002048 GO:0005509
Adu01g02546 260 SMART efh_1 51 79 IPR002048 GO:0005509
Adu01g02546 260 SMART efh_1 131 159 IPR002048 GO:0005509
Adu01g02546 260 SMART efh_1 15 43 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02546 Adu-Chr1 94778520 94785790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02546 1 157 EF-hand Containing Proteins AT5G49480 55.556 3.82e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02546 K02183 - gmx:100527230 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02546 01 94778520 94785790 Adu01g02546 01 94778520 94785790 ECH