Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02113 ATGGCTACCGTCGAACCAATCCAGAACGGCACCTCCAACAATGTTTCCCAGCCACTTGCACCGGCAAATGCCGCCGCCGCCGCCGAACAACCCTCCACAAACCCTTCAACCGATGCACCCGAATCCGAGGCGGTTCCGGCACCTGAAGCTGCCGCAACCGGCAGTACCACCACCACTCCGCCGGAGAAGAGATGGCCTGGTTGGCCCGGCCACTGCGTGTTCCGGCTCATCGTGCCGGTGCTCAAAGTCGGCAGCATAATTGGGCGGAAGGGCGAGCTCATTAAGAAGACATGTGAAGAGACTCGAGCTCGCATTCGCGTTCTAGATGGTGCTGTCGGCACTTCCGATCGAATCGTACTTATATCAGGGAAGGAAGATCCAGAGACAGCATTCTCTCCTGCAATGGATGCTGTAATGAGGATTTTTAAGCGTATATCGGGATTATCTGAAACTGAGGGCGAGAATATGACATTGGGAGCTTCCGGGGGCAATTTTTGTTCTATCCGTTTATTGGTAGCATCAACACAGGCCATCAATTTGATTGGAAAGCAGGGCTCGTTAATCAAATCCATACAGGAAAGCACTGCTGCTTCTGTTAGAGTATTGTCAGGAGACGAGGTGCCATTTTATGCTGCGGCCGATGAAAGGATTGTAGAGCTGCAGGGAGAAGTCTTGAAGGTGCTTAAGGCACTGGAAGCAGTAGTTGGGCACCTGAGGAAATTTTTGGTGGATCATACTGTTCTTCCCCTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGACCACCAGGTGGATACCTGGGCTGACAAGCCATCGCTGTATAGTGCTTCCCAACCTTCCATTGTTGCTGATGTTTCTCTTCCAACAAAAAGGGATGCTCTCTTTGTTGAGCGTGAGAATCAATTGGATTCATTACTCCCTTCCTCCTCAGTGTCACTGTACAGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCAGCTCTGGGCCGTGCTGCTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACGGTGCAGGAGAGCAGAGTGCCTGATGAAATTATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGTTGGCACAACAACTGATTCAGGAAGTGATAACTAATCACAAAGAGCCTGCCGCTAGTGCTTACAGCAGGTTAGATGCCGATCTGAGGTCTACTTACGCCCAATTGGGCAGTACATCATACTCATCATCTTCGTTGTCCACGCAACCTTACAGCGGTTATGGTTCTTCTGGTCTTGGAGGCTACAGTTCTTTCAGACTTTAA 1392 0.4892 MATVEPIQNGTSNNVSQPLAPANAAAAAEQPSTNPSTDAPESEAVPAPEAAATGSTTTTPPEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTSDRIVLISGKEDPETAFSPAMDAVMRIFKRISGLSETEGENMTLGASGGNFCSIRLLVASTQAINLIGKQGSLIKSIQESTAASVRVLSGDEVPFYAAADERIVELQGEVLKVLKALEAVVGHLRKFLVDHTVLPLFEKTYNATISQDHQVDTWADKPSLYSASQPSIVADVSLPTKRDALFVERENQLDSLLPSSSVSLYRQDSSLSGLRSSALGRAAGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVITNHKEPAASAYSRLDADLRSTYAQLGSTSYSSSSLSTQPYSGYGSSGLGGYSSFRL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02113 463 MobiDBLite consensus disorder prediction 1 20 - -
Adu01g02113 463 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 47 457 - -
Adu01g02113 463 ProSiteProfiles Type-1 KH domain profile. 71 138 - -
Adu01g02113 463 ProSiteProfiles Type-1 KH domain profile. 165 234 - -
Adu01g02113 463 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 64 139 IPR036612 GO:0003723
Adu01g02113 463 Pfam KH domain 343 405 IPR004088 GO:0003723
Adu01g02113 463 Pfam KH domain 74 126 IPR004088 GO:0003723
Adu01g02113 463 Pfam KH domain 168 234 IPR004088 GO:0003723
Adu01g02113 463 ProSiteProfiles Type-1 KH domain profile. 340 403 - -
Adu01g02113 463 CDD KH-I 342 404 - -
Adu01g02113 463 CDD PCBP_like_KH 167 235 - -
Adu01g02113 463 CDD PCBP_like_KH 73 142 - -
Adu01g02113 463 Gene3D - 71 242 - -
Adu01g02113 463 Gene3D K Homology domain, type 1 339 414 IPR036612 GO:0003723
Adu01g02113 463 PANTHER PROTEIN, PUTATIVE-RELATED 47 457 - -
Adu01g02113 463 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 338 409 IPR036612 GO:0003723
Adu01g02113 463 MobiDBLite consensus disorder prediction 1 66 - -
Adu01g02113 463 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 248 IPR036612 GO:0003723
Adu01g02113 463 SMART kh_6 70 146 IPR004087 GO:0003676
Adu01g02113 463 SMART kh_6 164 239 IPR004087 GO:0003676
Adu01g02113 463 SMART kh_6 339 408 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02113 Adu-Chr1 88356278 88360194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02113 K21444 - gmx:100807645 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02113 01 88356278 88360194 Adu01g02113 01 88356278 88360194 ECH
Adu01g02113 01 88356278 88360194 Adu04g01269 04 29508511 29514369 PCT