Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01872 ATGCCAATAAATGTTGCAAATGAATATCAAGATGAAGGGAGAGTCCATGAAATGAATGGGATTGCAAAGCCATTACCTTCTAAGAAAGCCATAACTACAAACCAGTCACCAAGGAGTCCCTTGAGTCCACAAAAACTTCATCACCGGACTTTTTCCGGTACAAAGTTTCCAATTCATGGGGTTGGTGTTTCCTCTTTGGAACATGTCTGGGATGGTGCTGATAATTCACCTTCAATAAGAAGCTGTGGATCTTTTGGTGATGAGCCTAGAATTGATTCTTTGTTATCTTCAACGGATAGTCCAAGAAAGGCAGACAAAGGATTACCAAATTTCGGCCTTTCAGTACTAACAAAATCCTTATCCAAGGTAAGGACTACTCCAGCTTCAAAGCCTCCTGCTGGAATTAAGAATGAGAGCGTTTTGAAGACACAAACTAGCATGAACAGATCAAAACCTCCTTTAACCACATCAGGTTCCAAGAATGGTGCTGATTATTCGCCTCGATCATCGATATTGGATAAGCCTGAAATGGGACATGTTTTTCTAAAGCAGGCAAGGGACTTTATGTCAGTAGGGGATAACCCACAGAAAGCGCTCGAAGCGGCTCTTCAAGCGTTGAGAATATTCGAGAAGGTTGCTAACGGAAAGAGAAGTTTAGATTTGGTTATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGCCAATATGATAAGGCAATTCCAATAATTGAATGCTCAATTGAGATTCCTGTTGTTGAGGAAGGATTACAAAATGCCCTTGCTAAATTCTCAGGTTACATGCAACTGGGAGATACGTATGCTATGCTAGGCCAAATTAAGAATGCAATTATCTATTACTCTGAAGGGCTTGAACTACAGAAGCAGGTTTTGGGGGAAACAGATCCAAGAGTTGGTGAGACTTGTAGGTATGTTGCTGAAGCCAATGTTCAAGCATTTCAATTAGATGAAGCAGAGAGGCTATGCCAAATGGCTCTTGACATTCATAGGGAAAATGGTTCCCCCCAATCTCTCGAAGAAGCGGCCGATAGAAGGTTAATGGGACTTATATGCGAAACAAAGGGAAATCATGAAGCTGCATTGGAGCATCTTGTTTTAGCCAGCTTGGCAATGGTGGCAAATGGCCAAGAAGTTGAGGTGGCATCTGTTGATTGTAGCATTGGAGATACATTTATATCATTGGCTCGATACGATGAAGCCATCGTGGCATTCCAGAAAGCGCTGAAGGTCTTCAAAGCCAGCAAAGGAGAGAATCATCCTGCGGTCGCATCAGTCTATGTGCGCTTAGCTGAATTGTATAACAGGACCTGGAAGCTAAAGGAATCAAGGTTTTATTGCCAAAGCGCGCTTCGGATCTATGAGAATCCAGCTGCTGGTGTCCCGCCAGAGGACATTGCCATTGGTCTAACTAATGTCTCCGTTATCTACGAGTCGATGGGTGAGCCTGAAAAGGCACTTAACTTGCTGCACAAGGCACTTGTGATACTGAAGGATATGCCTGGACAACAAAGAACTATTGCAGGAATTGAAGCTCAAATTGGAGTTATCAACTACATGTTGGGGAGATATCAAGAATGCTATGATGCTATGGAGAATGCTATCTCGAAGCTTCGTGCCAGCGGAGATAAGAAATCAGCATACTTTGGCGTCGCTCTTAATCAAATGGGACTTGCTTGTGTGCAGCTTCATGCCTTGGAAGAGGCTGTAGAATTGTTTGAAGAAGCAAAGATTGTTCTGGAACAAGAGTATGGACCATATAACTCTGAAACTCTTGGAGTGTATAGCAATCTTGCTGGCGCCTATGATGGACTTGGCAGGGTGGATGATGCAATTGACATTCTGGATTACATAGTGGAGATGAGGGAATCAAAGCTTGGGACAGCAAATCCAGATGTTGTTGATGAGAAGAGAAGGTTGGATGAGTTGTTGAAGCAAACAGGGAGAGTTCGTACAAGAAAAGGAAGGTCACTTGATCAGCTTCTTGATGGAAATGTCCGTACTATGGGTGACCTTATTTTCCTCAATGCCTGA 2055 0.4292 MPINVANEYQDEGRVHEMNGIAKPLPSKKAITTNQSPRSPLSPQKLHHRTFSGTKFPIHGVGVSSLEHVWDGADNSPSIRSCGSFGDEPRIDSLLSSTDSPRKADKGLPNFGLSVLTKSLSKVRTTPASKPPAGIKNESVLKTQTSMNRSKPPLTTSGSKNGADYSPRSSILDKPEMGHVFLKQARDFMSVGDNPQKALEAALQALRIFEKVANGKRSLDLVMCLHVTAAIYCSLGQYDKAIPIIECSIEIPVVEEGLQNALAKFSGYMQLGDTYAMLGQIKNAIIYYSEGLELQKQVLGETDPRVGETCRYVAEANVQAFQLDEAERLCQMALDIHRENGSPQSLEEAADRRLMGLICETKGNHEAALEHLVLASLAMVANGQEVEVASVDCSIGDTFISLARYDEAIVAFQKALKVFKASKGENHPAVASVYVRLAELYNRTWKLKESRFYCQSALRIYENPAAGVPPEDIAIGLTNVSVIYESMGEPEKALNLLHKALVILKDMPGQQRTIAGIEAQIGVINYMLGRYQECYDAMENAISKLRASGDKKSAYFGVALNQMGLACVQLHALEEAVELFEEAKIVLEQEYGPYNSETLGVYSNLAGAYDGLGRVDDAIDILDYIVEMRESKLGTANPDVVDEKRRLDELLKQTGRVRTRKGRSLDQLLDGNVRTMGDLIFLNA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01872 684 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Adu01g01872 684 Gene3D Tetratricopeptide repeat domain 585 666 IPR011990 GO:0005515
Adu01g01872 684 SUPERFAMILY TPR-like 180 296 IPR011990 GO:0005515
Adu01g01872 684 Pfam Tetratricopeptide repeat 388 463 - -
Adu01g01872 684 Pfam Tetratricopeptide repeat 559 630 - -
Adu01g01872 684 PANTHER KINESIN LIGHT CHAIN 68 672 - -
Adu01g01872 684 SUPERFAMILY TPR-like 425 631 IPR011990 GO:0005515
Adu01g01872 684 MobiDBLite consensus disorder prediction 122 172 - -
Adu01g01872 684 Pfam MalT-like TPR region 193 385 IPR041617 -
Adu01g01872 684 ProSiteProfiles TPR repeat profile. 265 298 IPR019734 GO:0005515
Adu01g01872 684 MobiDBLite consensus disorder prediction 138 166 - -
Adu01g01872 684 Coils Coil 570 590 - -
Adu01g01872 684 SMART tpr_5 474 507 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 599 632 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 265 298 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 222 255 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 389 422 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 557 590 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 431 464 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 307 340 IPR019734 GO:0005515
Adu01g01872 684 SMART tpr_5 515 548 IPR019734 GO:0005515
Adu01g01872 684 Gene3D Tetratricopeptide repeat domain 377 555 IPR011990 GO:0005515
Adu01g01872 684 SUPERFAMILY TPR-like 265 463 IPR011990 GO:0005515
Adu01g01872 684 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 68 672 - -
Adu01g01872 684 Gene3D Tetratricopeptide repeat domain 172 264 IPR011990 GO:0005515
Adu01g01872 684 Gene3D Tetratricopeptide repeat domain 265 376 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01872 Adu-Chr1 78995476 78998757 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01872 - - vvi:100255253 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01872 01 78995476 78998757 Adu01g01872 01 78995476 78998757 ECH