Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01620 ATGAACGACCACCATTTTGTTACTTCTCTCAAAACCCTAACCCCACACATCACATGCATGGCGGTGCACCGTAACCTACTCTATGCCGCATCCCTAAACCTCATCAACGTCTTCGACTTCTCTCACTACTACAGCCACGTCGACGCCTTCAACGACACCAACCCGTCCTCCGGTTTCGTCAAATCCATAACCTTCACCGCCACAAAAGTCTTCACCGCACACCAAGATCGAAAGATTCGAATCTGGTTCATCACCTCCTCAAAACGACACCGTTTCCTGTCTTCCCTTCCAACCGTTAAAGACTGCATTCGCCGCTGCATCGTTCCGAGAAACTACGTCAGCGTCCGACGCCACCGTAGGAGCCTCTGGATCCAGCATTGCGACACCGTTTCGGGCTTGGCACTGAACAAAGGCCTCATGTATTCGGTTTCTTGGGACAAGAGCCTCAAGGTTTGGGACTTAAACGGTTACCGGTGTTTGGAGTCCGTTAAGGCGGCGCATGAGGACGCTATTAACGCCGTCGTGGTTGCAACTGACGGAACCGTTTACACGGCTTCGGCGGATGGGTGCATTAAGGTTTGGGAGAGGGATGATAAGGTGAAACGCCACGTGCTCGTGAGCACCGTGGGGAAGAAGAGATCGGCGGTTAATGCGCTTGCATTATCGGACGGTGGGGATTTGTTTTCCGGGGGATGCGATGGCGGGATCTGTAGGTGGGAGAGGAAGTGTAGTGCAAACAAGGGAAACGACATCGTTTTGGTGGAGAGGTTGAGGGGTCACGGTGGGGCCATTTTGTGTATGATCAGCGTATGTGGTTTGTTGGTAAGTGGGTCATCGGATCGGACGGTCAGGATTTGGCAGAGGGAAAAGGAGAATAGTGGGTTCTGTTGCAGGCTTGTTTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTTGCGTTCTCGAAGGGTGAAGAAGGTGATGATGAGTCAAACGGTGTCGTTACGATCTTAAGTGGAAGCCTTGATGGGGATATTAGGGTGTGGGAGGTGTTTGGTTTGGCTTGA 1047 0.5224 MNDHHFVTSLKTLTPHITCMAVHRNLLYAASLNLINVFDFSHYYSHVDAFNDTNPSSGFVKSITFTATKVFTAHQDRKIRIWFITSSKRHRFLSSLPTVKDCIRRCIVPRNYVSVRRHRRSLWIQHCDTVSGLALNKGLMYSVSWDKSLKVWDLNGYRCLESVKAAHEDAINAVVVATDGTVYTASADGCIKVWERDDKVKRHVLVSTVGKKRSAVNALALSDGGDLFSGGCDGGICRWERKCSANKGNDIVLVERLRGHGGAILCMISVCGLLVSGSSDRTVRIWQREKENSGFCCRLVLEGHEKPVKSLVAFSKGEEGDDESNGVVTILSGSLDGDIRVWEVFGLA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01620 348 Gene3D - 245 346 IPR015943 GO:0005515
Adu01g01620 348 Gene3D - 3 244 IPR015943 GO:0005515
Adu01g01620 348 Pfam WD domain, G-beta repeat 256 286 IPR001680 GO:0005515
Adu01g01620 348 Pfam WD domain, G-beta repeat 159 194 IPR001680 GO:0005515
Adu01g01620 348 Pfam WD domain, G-beta repeat 297 342 IPR001680 GO:0005515
Adu01g01620 348 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Adu01g01620 348 SUPERFAMILY WD40 repeat-like 5 345 IPR036322 GO:0005515
Adu01g01620 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 344 IPR001680 GO:0005515
Adu01g01620 348 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Adu01g01620 348 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Adu01g01620 348 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Adu01g01620 348 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 5 344 IPR045182 -
Adu01g01620 348 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 5 344 - -
Adu01g01620 348 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Adu01g01620 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 195 IPR001680 GO:0005515
Adu01g01620 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 287 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 117 153 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 3 39 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 156 195 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 294 343 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 46 83 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 250 287 IPR001680 GO:0005515
Adu01g01620 348 SMART WD40_4 202 240 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01620 Adu-Chr1 50333982 50335070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01620 126 346 Acyl Lipid Metabolism Gene Families AT3G18860 24.893 1.95e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01620 - - aprc:113874855 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01620 01 50333982 50335070 Adu01g01620 01 50333982 50335070 ECH