Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00848 ATGGAAGCGGAAGCAAGTGAAGAACGACGAAGGTCGATAGCAGCACCTTTCATATTCTTCATCATTTTCGCTTTTCATTTCGGATCAAATTGGATCGAACGCCACAAAAAGAGTCGATCCGAGCAAGAAAAAGAGAACCAGATGCGAGCACAAATAAAACAACTTCTGAGGGAAGCAAGTACACTGTCACAGCCAGCCACCTTTGCACAGGCAGCAAAACTCAGAAGACAAGCAGCTGCTAAAGAGAGAGAACTTGCAAAGTGTCAAAATGTACAGAACAAGGATAATGCATTGTACTCAAAAGTTCTGCTCATCGCCCGGGTTTTAACATATTTCGTTTTGCTTATCTGGTTTTGGAGTGTTCCTGTGGCTACCATATCTCAACAACTTGTGCAACCATTTGGAAGATTATTATCTTGGAGGACTGGTGGGTTTCAAAATGGCAATGTTATTATTGGGATTATACCTTGGCTAATAGTATCTACCAGGAGGCCACTGAGTAAGATCCATTCTGCATTTGCTTGTTATATGATAGCCATTACCTTGCTGGCACTGGATCCGTATCGTTTTCCTCCGTCAACCGACCCCCCCTTTGCTCGATCGTTCGGCGATCTCGGTAACATGTACGGTCCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAACAGGCAGCTTTCAACCCTATGGATACGGTGGTGGCTTCCAGCCCCCTCCTCCATTTCCTGTGGTTCGTCTCAGGGGACTTCCATTCAACTGCACTGACATTGACATCCTGAAGTTCTTTGCTGGACTGACCATTGTGGATGTGTTGCTTGTCAACAAGAGTGGACGATTCTCAGGAGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAATTTGCTCTACAGAGAGACCGGCAGAACATGGGTCGCAGATATGTGGAAGTCTTCAGGTGCAAGAAGCAAGATTACTACAATGCTGTTGCATCTGAGGTCAATTATGAAGGAATATACGATAATGACTACCATGGAAGCCCTCCTCCATCTCGGACCAAAAGGTTCAGCGATAAAGATCAGATGGAATACACTGAGATATTGAAGATGCGTGGACTTCCATTTTCAGCTACTAAAGCTCAAATTATTGATTTTTTTAAAGATTTCAAGCTGATAGAAGATAGGGTACACATTGCTTGTCGCCCAGATGGAAAAGCTACTGGAGAGGCTTATGTGGAGTTTGTTTCCCCCGACGAGGCCAAGAGAGCAATGTGCAAGGATAAAATGACAATTGGATCAAGGTACGTGGAGTTGTTTCCTTCGACAACAGATGAAGCTAGGCGGGCAGAATCAAGATCAAGGCAGTAA 1419 0.4553 MEAEASEERRRSIAAPFIFFIIFAFHFGSNWIERHKKSRSEQEKENQMRAQIKQLLREASTLSQPATFAQAAKLRRQAAAKERELAKCQNVQNKDNALYSKVLLIARVLTYFVLLIWFWSVPVATISQQLVQPFGRLLSWRTGGFQNGNVIIGIIPWLIVSTRRPLSKIHSAFACYMIAITLLALDPYRFPPSTDPPFARSFGDLGNMYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSFQPYGYGGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVASEVNYEGIYDNDYHGSPPPSRTKRFSDKDQMEYTEILKMRGLPFSATKAQIIDFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMCKDKMTIGSRYVELFPSTTDEARRAESRSRQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00848 472 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 208 472 - -
Adu01g00848 472 Pfam CHD5-like protein 36 157 IPR028945 GO:0071816
Adu01g00848 472 SUPERFAMILY RNA-binding domain, RBD 255 345 IPR035979 GO:0003676
Adu01g00848 472 SUPERFAMILY RNA-binding domain, RBD 382 469 IPR035979 GO:0003676
Adu01g00848 472 CDD RRM_hnRNPH_ESRPs_RBM12_like 384 456 - -
Adu01g00848 472 Coils Coil 71 91 - -
Adu01g00848 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 383 460 IPR000504 GO:0003723
Adu01g00848 472 CDD RRM_hnRNPH_ESRPs_RBM12_like 267 336 - -
Adu01g00848 472 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 208 472 - -
Adu01g00848 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 453 IPR000504 GO:0003723
Adu01g00848 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 331 IPR000504 GO:0003723
Adu01g00848 472 Coils Coil 38 58 - -
Adu01g00848 472 Gene3D - 258 353 IPR012677 -
Adu01g00848 472 Gene3D - 368 472 IPR012677 -
Adu01g00848 472 SMART rrm1_1 267 336 IPR000504 GO:0003723
Adu01g00848 472 SMART rrm1_1 384 456 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00848 Adu-Chr1 11368762 11375587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00848 K12898 - gmx:100816391 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00848 01 11368762 11375587 Adu01g00848 01 11368762 11375587 ECH