LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g00782	ATGGTGGGGTATTGGAAAATGAGAAACATAAGGAGTTGTTCTTCTTCAGCTTCAGAGTCTCTCTTCTCATCTCTTCTTATTATTCTTCTTTGTTTCCATGGCACACTAGTTTGTTCCAAATACATAAAGTACAACACTGATGCTTCTATAAATGAAGGGAAATTGAATGTTCATTTGGTTGCACATTCCCATGATGATGTTGGTTGGTTGAAGACCATTGATCAATACTATGTTGGATCAAGAAACAACATTCAGGGTGCATGTGTTGAGAATGTGCTGGATTCGGTGGTTATGTCTCTTCAGAGAGATCCAAATAGAAAGTTTGTGTTTGCTGAGATGGCATTCTTTCATAGATGGTGGGTAGAACAGAGTCCAGAAATTAAAGAACAAGTGAGAAAGCTTGCGGATGCTGGCCAGCTTGAATTCGTGAATGGAGGATGGTGCATGCATGATGAAGCAGCACCACATTACATAGACATGATAGATCAAACAAGTTTGGGACATAGATTCATAAAACAAGAGTTCAACAAGACACCTCGTTCTGGTTGGCAAATTGACCCTTTTGGACACTCTGCTGTTCAAGCTTATCTTCTAGGTGCTGAGGTTGGTTTTGATTCAGTACACTTTGCTAGGATTGATTATCAAGACAGAGCAAAGCGCAAAGTTGATAAGTCACTTGAAGTTGTGTGGCGTGGTTCCAAAACATTTGGTTCTTCTGCTCAGATTTTTGCTAATGCTTTCCCTGTTCATTATAGTGCTCCAAACACTTTTAATTTTGAAGTCAATAATGAAAACTTGATCCCATTACAGGATGATCCTCTTCTTTTTGACACCAATATCATACAGCGTGTTGAAGATTTTGTTAATGCTGCTACTAGTCAAGCAAGTGTGACAAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCAATACCAATATGCTGAAAGTTGGTTCAAGCAAATGGATAAATTGATTCACTATGTTAATTTGGATGGGAGAGTGAATGCCTTGTATTCTACTCCATCTATTTACACTGATGCCAAAAATGCTGCTAATGAAACATTGCCATTGAAAACTGATGATTATTTCCCGTATGCTGATGGAGCAAATGGTTATTGGACAGGATACTACACGAGTCGCCCTGCCCTCAAGCGATATGTTAGGTCGCTAAGTGGATACTATTTGGCAGCACGGCAACTCGAGTTTTTGGCTGGAAAGAAATCTACAACTGGAAGTAATACATTTGACCTTGGAGAAGCTCTTGGAGTTGCACAACACCATGATGCTGTCTCTGGCACAGCCAAACAACATGTAACTGATGACTATGCTAAAAGACTTGCTATTGGAGCTTCTAAGGCTGAAAAAGTTTCTAGCACTTCTCTGGCTTGTCTTTCTGGCAAGAAATCAAGTGGTCACTGTTCAGCTCCTGCAACGGCATTTGCCCAGTGTCAATTACTCAACATCAGTTACTGCCCACAAACAGAGGACAATATTCCAGAGGCTAAGAGTTTGGTAGTAGTATTGTATAACCCACTTGGATGGAATCGTACTGAGATTGTTAGAATACCAGTTAATGATGATAATCTTGTTGTCAAAGATTCTTCTGGAAATATCATTGAAGCACAGTATGTGGACACAGATAATGTAACAAAAAATTTAAGAAGCTTCTATGTTGAGGCCTATTTAGGGGTGCAACCAAAAGAAGCACCAAAATATTCACTTCTGTTTCAAGTTTCAGTACCTCCACTTGGATGGAGTACCTACTTCATTTCGAAAGCATCTGGAAATGGTAAAAAAAGAAGTCCTTTCCTTTCACAGCTCATCAGCGGCGACACTGTTACCATAGGACCTGGGGATTTAAAGATGTCATTTTCTTCAACTTCTGGACAACTTCAACGGATGTTTAATTCCAAAACTGGAGTTGATATACCGGTTCAACAAAGCTATCTCTGGTATGCTTCTAGTGGAGGCAGCTTTCCTGATTATCAGGCTTCTGGTGCATACATATTCCGGCCTACTGAATCCCGGCCAACTGTTGTTTCAAGATCAATTCCCTACAAAGTAATCCGCGGGCCACTAGTTGATGAGATTCATCAAGAGTTTAACTCTTGGATTTACCAAGTTATTAGGCTTTACAAAGACAAAGACCATGCTGAAGTTGAATACACTGTTGGTCCAATTCCAACTGATGATGGAGTTGGAAAAGAGGTGATCACACAAATAACAGCAAATATGGCTACAAACAAGGAGTTTTATACTGATTCTAATGGCAGAGATTTTCTGAAAAGGGTTCGTGATTACAGAGAAGATTGGCCTCTTCAAGTTACTCAACCTGTGGCAGGAAACTACTATCCAATTAATCTTGGAATTTATGTTAAGGATCAGAAATCTGAACTCTCTGTCTTAGTTGATCGTGCCACGGGTGGAGCGAGCATTAGAGATGGAGAGATGGAACTAATGCTTCACAGGCGTATTCTCCAAGATGATGGTAGAGGAGTAGGAGAAGCTCTTGATGAAATAGATTGTGCAAAAGATTATGGATGTAAAGGACTAACGGTGAGAGGAAATTACTACCTTGGCATCCACAAGCTAGGATCTGGTTCCCGGTGGCGTCGGGCGACTGGTCAGGAGATTTACTCACCCCTCTTGTTGGCTTTCACATATGAGAGCTTGAAAAATTGGAAGTCATCTCATGTGACAAAAGGAACTGTCTTGGAGCCAAATTACAGCTTGCCTCCCAATGTTGCTCTGCTAACTCTTGAGGAGTTGGATGGTGGAAGTGTGCTTCTCCGTTTGGCACATCTCTATGAGCAAAGTGAAGATGCTGAGTATTCAACTCTGGCCAAAGTTGAATTGAAGAAGTTGTTTGCCAGAAAACAGATAAAAGAGTTGAAGGAGATGAGTTTATCAGCTAACCAAGAGAAATCAGAAATAAAGAAAATGAATTGGAATGTTGAAGGGGAGATTAATGGAAAAGAACCTAAACCACTTAGGGGTCGCCCTGTTAATACTTTCAATTTTGTTGTTGAGCTTGGTCCTATGGAAATACGTACATTCTTGCTGAAATTTTAG	3078	0.4032	MVGYWKMRNIRSCSSSASESLFSSLLIILLCFHGTLVCSKYIKYNTDASINEGKLNVHLVAHSHDDVGWLKTIDQYYVGSRNNIQGACVENVLDSVVMSLQRDPNRKFVFAEMAFFHRWWVEQSPEIKEQVRKLADAGQLEFVNGGWCMHDEAAPHYIDMIDQTSLGHRFIKQEFNKTPRSGWQIDPFGHSAVQAYLLGAEVGFDSVHFARIDYQDRAKRKVDKSLEVVWRGSKTFGSSAQIFANAFPVHYSAPNTFNFEVNNENLIPLQDDPLLFDTNIIQRVEDFVNAATSQASVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNLDGRVNALYSTPSIYTDAKNAANETLPLKTDDYFPYADGANGYWTGYYTSRPALKRYVRSLSGYYLAARQLEFLAGKKSTTGSNTFDLGEALGVAQHHDAVSGTAKQHVTDDYAKRLAIGASKAEKVSSTSLACLSGKKSSGHCSAPATAFAQCQLLNISYCPQTEDNIPEAKSLVVVLYNPLGWNRTEIVRIPVNDDNLVVKDSSGNIIEAQYVDTDNVTKNLRSFYVEAYLGVQPKEAPKYSLLFQVSVPPLGWSTYFISKASGNGKKRSPFLSQLISGDTVTIGPGDLKMSFSSTSGQLQRMFNSKTGVDIPVQQSYLWYASSGGSFPDYQASGAYIFRPTESRPTVVSRSIPYKVIRGPLVDEIHQEFNSWIYQVIRLYKDKDHAEVEYTVGPIPTDDGVGKEVITQITANMATNKEFYTDSNGRDFLKRVRDYREDWPLQVTQPVAGNYYPINLGIYVKDQKSELSVLVDRATGGASIRDGEMELMLHRRILQDDGRGVGEALDEIDCAKDYGCKGLTVRGNYYLGIHKLGSGSRWRRATGQEIYSPLLLAFTYESLKNWKSSHVTKGTVLEPNYSLPPNVALLTLEELDGGSVLLRLAHLYEQSEDAEYSTLAKVELKKLFARKQIKELKEMSLSANQEKSEIKKMNWNVEGEINGKEPKPLRGRPVNTFNFVVELGPMEIRTFLLKF	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g00782	1025	SUPERFAMILY	Galactose mutarotase-like	482	1025	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Adu01g00782	1025	SMART	Alpha_mann_mid_2	373	448	IPR015341	GO:0004559\|GO:0006013
	Adu01g00782	1025	CDD	GH38N_AMII_LAM_like	55	331	-	-
	Adu01g00782	1025	Pfam	Glycosyl hydrolases family 38 N-terminal domain	56	368	IPR000602	GO:0004559\|GO:0006013
	Adu01g00782	1025	Gene3D	-	494	612	IPR013780	-
	Adu01g00782	1025	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	916	1022	IPR041147	-
	Adu01g00782	1025	SUPERFAMILY	Glycoside hydrolase/deacetylase	44	370	IPR011330	GO:0005975
	Adu01g00782	1025	PANTHER	ALPHA-MANNOSIDASE	24	1025	-	-
	Adu01g00782	1025	Pfam	Alpha mannosidase middle domain	374	466	IPR015341	GO:0004559\|GO:0006013
	Adu01g00782	1025	Gene3D	-	614	882	-	-
	Adu01g00782	1025	Pfam	Glycosyl hydrolases family 38 C-terminal domain	620	833	IPR011682	GO:0004559\|GO:0006013
	Adu01g00782	1025	Gene3D	Glycoside hydrolase family 38, central domain	337	415	IPR037094	GO:0004559\|GO:0006013
	Adu01g00782	1025	Coils	Coil	949	969	-	-
	Adu01g00782	1025	Gene3D	-	905	1025	-	-
	Adu01g00782	1025	Gene3D	Glycoside hydrolase 38, N terminal domain	55	336	IPR027291	-
	Adu01g00782	1025	Gene3D	Glycoside hydrolase family 38, central domain	416	472	IPR037094	GO:0004559\|GO:0006013
	Adu01g00782	1025	PANTHER	ALPHA-MANNOSIDASE	24	1025	-	-
	Adu01g00782	1025	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	373	474	IPR028995	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g00782	Adu-Chr1	10584749	10595158	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g00782	24	971	Glycoside Hydrolase	AT3G26720	59.832	0.0	1179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g00782	K01191		-	gmx:100775419	1644.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu01g00782	01	10584749	10595158	Adu01g00782	01	10584749	10595158	ECH