LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g00291	ATGGAGGAAGGCGAAGGCGGGGATCCCATGGATCAGTTCCACCGTAACGAGGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGACGACGACTACGAGGACCTTTACAACGACGTCAATGTCGGTGAGGGCTTCCTCCAATCGCTGCGTAAAAACGACGATCTAGCGTTTCGAAACGACGATGCCGTTCAGGACAACAGCAAGAAGCCCCAACAAGAAGCTGTCGCTGGGGTTTCGATTCCTGGTGTAGGTGGTGGTGGTGAGGGACCCGGTGGTGGTGGTGGTGGTGGGGCTGTGGATGGTGCTTCTAGGGTTTCTGGGTTTCAGAATCAGGGGTTTAGAGGGAATGATTTGGGTGCAAAACAAGGTACTGGTGGATCTGGAATTAGGGTTGAGTTGGGTCAGCCATCTGGGAAAGTGAGTGAAATTGAGGATCGGAGTGGAAATGGTGCTGGTGTTGGTGGTGGTGGTGCTGCTGCGGTGCAAGGGATTGGACAGCAGCCTCATGGTGGTGGTGGTGGTGTTGTGGGCTCCGTTGGGAATGAGGGTTTGGCCAGGCAAAGTGGTGGTGGCGGTGTTGGAGTTGCAGCTGGAGGAGATGTTAATAGGATTGGTGGGAATGGGATCGGGAACAGTGTGGGTGTAGTTAATACTATTAACACTGGTGGACCTGGACCTGGACCTGGACCTGGTGGTCCGGTGGGTGCTGGCAGTGCTGTTGCTCCTGGTGGTGGCGGCGGCGGTGGAGGTACCATATTGTTTGTGGGTGATTTGCATTGGTGGACTACCGATGCTGAACTGGAGGCTGAGCTCTGTAAGTACGGCCCTCTCAAGGAGGTGAAGTTTTTCGATGAGAAAGCTAGTGGGAAATCTAAAGGGTATTGCCAGGTTGAATTTTTTGATCCTGCAGCTGCCACTGCCTGTAAGGAAGGCATGAATGGGCATATGTTTAATGGAAGGCCTTGTGTTGTTGCCTATGCTTCGCCTTTTACAGTTAAGAAAATGGGTGAGGCTCAGGTGAATAGGAACCAGCAGATGAACCAAACAGCAGCTCCTCAGGGAAGGAGGGGGCCTGCTGAGGCAGGGGCTAAGCCTGCTGGGAGTAATATTACAACTGGCGGTAACTACCAAGGTGGAGATGCAAATAGAGGTTATGGAAGGGGTAACTGGAGAGGGAATAATCCTGGGATGGGTAATAGGGGGCCTGTTAATCCTATGAGGAATCGAGGAGGTGGTATGGGTGGTAGAGGTATAATGGGAAATGGTGGGAATGGATTTGGACAGGGCATGGGTGCTACACCTCCTATGATGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTACCTATGGAGGCTTTCCTGGTGCTCCAACACCTCCATTCTCTGGCATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGCACCCCATGTTAATCCTGCCTTTTTTGGAAGAGGGATGCCTGTGAATGGCATGGGGATGATGCCTGGAGCTGGTATGGATGGACCTAATATGGGAATGTGGTCTGATCCCAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGCGGCAGGGCCGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCGGATCATCAGTATGGTGAGGCAAGTCATGATAGAAGTAACTGGCCTAATTCTATGAGGGAAAAAGATAGAGGTTCGGAAAGGGACTGGTCTGGCACATCTGAAAGGAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCCAGAGAAAAAGATGTGGGCCATGATCATGAATGGTCCGAAAGAAGGCATCGTGATGACAGGGACATTGGTCGAGAAAGATCTCGAGACCGTGATAGGGAAAAGTCTAGAGACCGCGATCGTGACCGTGATCGTGACCGCGAAAGGGATCGTGAACGAGATCGTGATCGTGACCGGTACAGGGAAGACAGGGACAAATATGCAGATCATCATAGGTACCGTGATCGTGAAGCAGAGCATGATGATGAATGGGAAAGGGGGCGGTCGTCGAGGACACACAGCAAATCACGGTTATCTCAAGAGGAGGAACATCATTCTAGGCCCAGAGATGCTGATTATGGGAAGCGGAGGCGGATGACCTCCGAGTAG	2178	0.522	MEEGEGGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNDDLAFRNDDAVQDNSKKPQQEAVAGVSIPGVGGGGEGPGGGGGGGAVDGASRVSGFQNQGFRGNDLGAKQGTGGSGIRVELGQPSGKVSEIEDRSGNGAGVGGGGAAAVQGIGQQPHGGGGGVVGSVGNEGLARQSGGGGVGVAAGGDVNRIGGNGIGNSVGVVNTINTGGPGPGPGPGGPVGAGSAVAPGGGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFFDEKASGKSKGYCQVEFFDPAAATACKEGMNGHMFNGRPCVVAYASPFTVKKMGEAQVNRNQQMNQTAAPQGRRGPAEAGAKPAGSNITTGGNYQGGDANRGYGRGNWRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGMGATPPMMHPQSMMNQGFDPAFGGPMGRMGTYGGFPGAPTPPFSGILPSFPGVGGVGLPAPHVNPAFFGRGMPVNGMGMMPGAGMDGPNMGMWSDPNMGGWGGEEPGGGRAGESSYGEEAASDHQYGEASHDRSNWPNSMREKDRGSERDWSGTSERRYRDDRDQGYERDAPREKDVGHDHEWSERRHRDDRDIGRERSRDRDREKSRDRDRDRDRDRERDRERDRDRDRYREDRDKYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRMTSE	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g00291	725	SUPERFAMILY	RNA-binding domain, RBD	253	346	IPR035979	GO:0003676
	Adu01g00291	725	MobiDBLite	consensus disorder prediction	63	182	-	-
	Adu01g00291	725	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	254	332	IPR000504	GO:0003723
	Adu01g00291	725	CDD	RRM_CFIm68_CFIm59	256	329	-	-
	Adu01g00291	725	Gene3D	-	251	364	IPR012677	-
	Adu01g00291	725	MobiDBLite	consensus disorder prediction	556	725	-	-
	Adu01g00291	725	SMART	rrm1_1	255	328	IPR000504	GO:0003723
	Adu01g00291	725	PANTHER	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	1	724	IPR034772	-
	Adu01g00291	725	MobiDBLite	consensus disorder prediction	349	406	-	-
	Adu01g00291	725	MobiDBLite	consensus disorder prediction	520	725	-	-
	Adu01g00291	725	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	256	325	IPR000504	GO:0003723
	Adu01g00291	725	PANTHER	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	1	724	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g00291	K14398		-	gmx:100813702	859.366

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu01g00291	01	3637537	3642365	Adu01g00291	01	3637537	3642365	ECH