Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01293 ATGGCCGAAGATAGCGCCGTTGAGTCTTGCGATTTACCGGTGAAGAGGCAGAGGGAAGAAGAAGAAGAGAATGGGGTTTCTGCTTCTCCTGTTTCCATGGAGACCGACATTAATGGTGGCAAGCTTCCTAATTTTATGTCTCCAGTGATTCCTGGATGGTTCTCTGAAATTAGCTCAATGTGGCCTGGAGAGGCGCACTCTTTAAAAGTTGAAAAGATATTATTTCAAGGGAAGTCTGACTACCAGAATGTGATGGTCTTCCAGTCATCATCGTACGGAAAGGTTCTTGTTTTGGACGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGCGGAGTCTTGCGGGAAGTCGCACGGCATTCTTTAGTTGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGCTTTGATGATCCACGTGTGGCGCTTCACATCGGTGATGGAGTCGCTTTTTTGAGAGATGTTCCAACAGGAACTTATGATGCAATCATAGTTGACTCTTCCGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAAGCTGAAAGTATATGGCTTCATATGCATATTATTGAGGGCATTGTCGATAACTGTCGCCAGATATTTAAAGGCTCCGTTGAATATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATCGGTTTTATGCTTTGCTCGACCGAAGGACCTCCTGTTGATTTCAAGCATCCACTGAACTCCATAGATGCAAATGATAGTAATCAGAAATCAGTAAGGCCACTGAAGTTTTACAACTCTGAGATTCATGAGGCGGCATTTTGCCTTCCATCGTTTGCCAGGAGAGTGATTGATTCTAAAGCGAATTGA 1029 0.4402 MAEDSAVESCDLPVKRQREEEEENGVSASPVSMETDINGGKLPNFMSPVIPGWFSEISSMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSLVEKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVALHIGDGVAFLRDVPTGTYDAIIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMHIIEGIVDNCRQIFKGSVEYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPLNSIDANDSNQKSVRPLKFYNSEIHEAAFCLPSFARRVIDSKAN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01293 342 NCBIfam spermidine synthase 53 332 IPR001045 GO:0003824
Accr9g01293 342 MobiDBLite consensus disorder prediction 9 25 - -
Accr9g01293 342 Gene3D Vaccinia Virus protein VP39 104 342 IPR029063 -
Accr9g01293 342 Pfam Spermine/spermidine synthase domain 109 296 - -
Accr9g01293 342 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 288 IPR030374 -
Accr9g01293 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 338 IPR029063 -
Accr9g01293 342 CDD AdoMet_MTases 129 237 - -
Accr9g01293 342 Gene3D Spermidine synthase, tetramerisation domain 45 103 IPR037163 -
Accr9g01293 342 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 340 IPR001045 GO:0003824
Accr9g01293 342 PIRSF Spermidine_synth 43 342 IPR030668 GO:0006595
Accr9g01293 342 MobiDBLite consensus disorder prediction 1 33 - -
Accr9g01293 342 FunFam Spermidine synthase 1 104 342 - -
Accr9g01293 342 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 130 143 IPR030373 -
Accr9g01293 342 Pfam Spermidine synthase tetramerisation domain 52 106 IPR035246 -
Accr9g01293 342 FunFam Spermidine synthase 1 44 103 - -
Accr9g01293 342 Hamap Polyamine aminopropyltransferase [speE]. 52 338 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01293 Accr-Chr9 17210149 17213279 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01293 K00797 - qsa:O6P43_033146 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01293 9 17210149 17213279 Accr10g01339 10 36505646 36508482 CCT
Accr9g01293 9 17210149 17213279 Accr9g01293 9 17210149 17213279 ECH