Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01273 ATGGCGGATTCCGCCGCTTCCCCTGCCATTCCAGAAGCCAACCCGCAGAAAGCTGATTCGGGTGCTCCCAATTCTCATCAGAACCAACCCGATCCGGTTCATCACTCCGCTGCCTCGGCAATACAACCTCCGCCATCACCTTCTGCGCCCGTCGGGGCGGTAAACCCTAACTCGAAGCCATCAGTAATGCCCATGCCACCTCCGCCACCTCCTTCTATTTCGTATGGGGCGGCACCTCAAGTCTCAGGTGGTGCCGTTGCCCCTCCGGTCGTGCCATCCTTCAGGCCAGTAGCTCCACAGACTCCCCAGTTTTCTCCCATGCCTAACGCCATTAACTATCAAAATCCAGCTGTTCAGCCGCCCGGTGTAAGCTCTGCCTCCCCAATGACTCATGGTGTGGCTAGTGGTGCCGGGGCGGTTCCAGTGCCAGCGCAGATGCAGCCAATGATGGTTCCTTATCAAATTCCTCCTGGTCAGCCTGCTAATCCGGCCTTGAGACCCTTTGCACCGATGCCCAATGGTTATACAGCCTTTCCAGGAGCTCCGCAAGGGACCATGCCTCCACCGGGAATGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTTCATTTCCTCCACGCCCACCTGGAGCTGTTAATGTGCTTCCGGCTGTATCGCGCCCTTCTGTTGCTGGGATCCCTTCTGTTCGCCCTGTCATTCCACCTGTGGTTAGACCAGTGGTTGCTCCTAGTATTACACCAGCTGATAAACCGCAAACTACAGTTTATATTGGAAAAATTGCATCAACAGTGGAAAATGAATTTATGCTTTCATTACTTCAGTTATGCGGACCTATCAAGAGTTGGAAACGCCCTCAAAATCCAACAAGTGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGTGTCCTCCGTGCATTGCGTCTGCTCAATAAATTGAATATTGATGGGCAAGAATTAACGGTCAATCCTAATGACGCGACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAATGATACTCAAGCTGTTGGATCTGAGAAAGATGATGAGGGTGCCAAACCTTCCAATGCAAAAGAGGAGGGAAAGCCTGATGACTCGAAGAAAGAGGATAGTAAGTCAGGGAACAAGGAAAATCATAATGTGACAAATCTCAGTATCATTAGTGATGAAGACAAGGAAGCTGATAGAGAGGCCTTAGAGAAGATTACAAACATGATAGAAGAGAGACTGAAGACAAGACCTTTACCTCCACCTCCTGCACAGGCAGCTCCTGATGGCCCTGCAAACTCAGCTTTGGAACAACCTTCAAAAGGAAGAGATGGAGACTCTGATGCAGATACGGTGAATAATGTTGCAGAAGCAGGTGATGATAAAAATGACAAGGAGGCAAATAGTGAGAACAAAGCAACCAGTGAACATGATAGGCCTGAGACCCCTGATAGAAGGCATGATAGGAGGAGCAAAGAAAGAGATCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGCATTAGGAAAGAGAGGGAACAAAGGAGGAGGATTGAGGAGGCTGAGCGCCAATATGAAGCATGCTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAACGTAGAAAGGAGATACTTTATGATGAAGACGAAGAGGACGATGATTCAAGGAAGAGGTGGCGCAGAAGTATGTTAGATGAGAAACGAAAGAAAAGATTGCGCGAAAAGGAAGAGGACTTGGCTGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGGGCCGAAGAGGATCAACAGTTGAAGCAGCAGAGGGATGCGCTGAGGCTACTTTCTGAGCATGTGAATGGTGGTGAAAAAAGTATGGCCACTGAGGATATGACTAATCTAGCCAAAAATATAGTTTCTGAACAAGACACTATAGCTGACCATGGTTATGAAGGCCTTACAGGTGATGGTAATGCACTGAATGGCATCAATGATGAAACCATGGCATCAATTGCTGTTTCTGATGCAAGACAGAGTGGCAATGCCCCTTCTAAGAAGTTGGGTTTTGGTTTGGTTGGTTCTGGGAAAAGAACTACTGTTCCTTCTGTCTTCCATGAGGAGGAGGATGATGATGCACACAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTGCAGGCTGTTCAACCAACTGTTTCTGGGGCCCCACCTGCAAATTTGGCTGCAGCTGCGGAATTTGCTAAGCGTTTATCCACTGCTAACATCAAGGAAGATAAGGTAGATGGAGAGTGGAATAGAAGTAGGCGTTTTAATGAGAAGGCTAACCACCGAAATAGGGACAGGAATGATGAAGATGGCTCTCACAACAAAGATGAAAGCAGGGAAAAGATTTCTGATCGTGAAAGGGATCGAGATCGTGGGTCAGAGAAACTGAAGACATCAGACAACAAAAAGCTATTTGATGCGAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTCTTTTCACATGAGATAAATTGGGCAGTGTATGATGAGCACCGGCTGCATGAAAGAATGAGACCTTGGATATCAAAGAAGATTACAGAGTTCTTGGGGGAAGAAGAAAAGACACTGGTAGATTACATAGTTTCAAGTACGCAGGACCATGTGAAAGCAACCCAGATGCTGGAGCTGCTTCAATCCATTTTAGATGAAGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAAGGTAGAGACAGGCCTTGCTTTGAGATCTAAATCTTGA 2919 0.4628 MADSAASPAIPEANPQKADSGAPNSHQNQPDPVHHSAASAIQPPPSPSAPVGAVNPNSKPSVMPMPPPPPPSISYGAAPQVSGGAVAPPVVPSFRPVAPQTPQFSPMPNAINYQNPAVQPPGVSSASPMTHGVASGAGAVPVPAQMQPMMVPYQIPPGQPANPALRPFAPMPNGYTAFPGAPQGTMPPPGMPRYPPPYGTMVRPSFPPRPPGAVNVLPAVSRPSVAGIPSVRPVIPPVVRPVVAPSITPADKPQTTVYIGKIASTVENEFMLSLLQLCGPIKSWKRPQNPTSGTPLSFGFWEFESAEGVLRALRLLNKLNIDGQELTVNPNDATKEYLEKYVKKKNENLQNDTQAVGSEKDDEGAKPSNAKEEGKPDDSKKEDSKSGNKENHNVTNLSIISDEDKEADREALEKITNMIEERLKTRPLPPPPAQAAPDGPANSALEQPSKGRDGDSDADTVNNVAEAGDDKNDKEANSENKATSEHDRPETPDRRHDRRSKERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAERQYEACLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEDEEDDDSRKRWRRSMLDEKRKKRLREKEEDLADRQKEEEEIAEAKRRAEEDQQLKQQRDALRLLSEHVNGGEKSMATEDMTNLAKNIVSEQDTIADHGYEGLTGDGNALNGINDETMASIAVSDARQSGNAPSKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGAPPANLAAAAEFAKRLSTANIKEDKVDGEWNRSRRFNEKANHRNRDRNDEDGSHNKDESREKISDRERDRDRGSEKLKTSDNKKLFDAKQLIDMIPKTKDELFSHEINWAVYDEHRLHERMRPWISKKITEFLGEEEKTLVDYIVSSTQDHVKATQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01273 972 CDD RRM_RBM25 255 338 IPR034268 -
Accr9g01273 972 MobiDBLite consensus disorder prediction 18 35 - -
Accr9g01273 972 SMART pwi_2 888 961 IPR002483 GO:0006397
Accr9g01273 972 SUPERFAMILY RNA-binding domain, RBD 188 330 IPR035979 GO:0003676
Accr9g01273 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 326 IPR000504 GO:0003723
Accr9g01273 972 Gene3D PWI domain 851 967 - -
Accr9g01273 972 Gene3D - 248 362 IPR012677 -
Accr9g01273 972 MobiDBLite consensus disorder prediction 356 389 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 345 541 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 736 758 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 450 541 - -
Accr9g01273 972 Coils Coil 555 590 - -
Accr9g01273 972 SUPERFAMILY PWI domain 893 960 IPR036483 GO:0006397
Accr9g01273 972 SMART rrm1_1 256 329 IPR000504 GO:0003723
Accr9g01273 972 MobiDBLite consensus disorder prediction 399 421 - -
Accr9g01273 972 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 28 972 - -
Accr9g01273 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 333 IPR000504 GO:0003723
Accr9g01273 972 MobiDBLite consensus disorder prediction 60 75 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 1 76 - -
Accr9g01273 972 ProSiteProfiles PWI domain profile. 875 972 IPR002483 GO:0006397
Accr9g01273 972 Pfam PWI domain 895 958 IPR002483 GO:0006397
Accr9g01273 972 Coils Coil 604 640 - -
Accr9g01273 972 FunFam RNA Binding Motif protein homolog 851 967 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 709 763 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 557 640 - -
Accr9g01273 972 MobiDBLite consensus disorder prediction 800 853 - -
Accr9g01273 972 Coils Coil 503 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01273 Accr-Chr9 16786043 16793760 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01273 K12822 - gmx:100809428 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01273 9 16786043 16793760 Accr9g01273 9 16786043 16793760 ECH