Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00544 ATGGACTCACAACAGAGCAATCTATTCGAGACCGCTTCGCAACCCGACACTGGCAACGACGCTTACACTTTCCTCGAATTTAACACTCAGGGGGAGGATTTCGACTACCCGGAGTTCCGTGACTCGATTAGGTCCCCATCGGCTTGGCCCACTCCCTCCGATTCGCTGGTTGACCCTTTGGAGCGTGGTGTTGGAGGTGGAGCGGGTTCTGATCACCAGTCCGATGCCTCGCCTGTTTCAGCTGCTCCAGGGAGCGCCACTAAAAACCGGGCAACGGGCTCTGGCAGCAGCGGGAACAGCCAGATGGTTGACACCCTGGCTGCTGGGATGAGCGGGTTGAATTTTGAGGATACCGGTGATGATGACAATTATGAATTCGGTAAAGGAGATTTCACTGAACATGCTTGCCGATATTGTGGGGTATCGAACCCTGCCTGTGTCGTGAGGTGTAATGTGCCTTCTTGTCGCAAATGGTTCTGTAACTCACGGGGGAATACGTCGGGTTCACATATCGTTAATCACCTGGTTCGATCGAAGCACAAGGAAGTCTGTCTTCACAAAGACAGTCCTTTGGGAGAAACGATTCTTGAATGCTACAATTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACAGAAAGCGTAGTTGTTCTTCTATGTCGTGAACCTTGCCTGAGTGTGAATGCCTTGAAAGATATGAATTGGGATCTCAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTTCTGCAGTGGCTTGTGAAGATTCCATCTGAACAGGAGCAGTTGAGAGCACGGCAGATAAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAAACCAATCCTGATGCTTCTCTTGAGGACCTTGAGAAACCTGGTGTGGACGATGAGCCTCAGCCTGTGGCTATAAAATATGAAGATGCTTACCAGTATCAAAATGTTTTTGCACCTCTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTGACCATCCGATGGGATGTTGGTCTTAATAAAAAACGCATTGCATACTTTGTATTTCCAAAGGAAGATAATGAGTTGCGTCTTGTTCCTGGTGATGAATTACGGTTGCGTTATTCTGGGGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGCTAACTGCACAAGAGGAAGTTGCTCTGGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCAGTGGATGAGACTAGTGTAAGCGGGTATATTTATCACCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGCAATACATTGCCTCGTCGCTTTGGTGCTCCTGGGCTTCCAGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAAAGCGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCTCCTGGAACTGGCAAGACTGTAACTTCTGCAGCAATTGTATATCACATGGCAAAACAGGGTCAGGGTCAGGTGTTGGTTTGTGCACCTAGCAATGTGGCTGTTGATCAGCTTGCTGAAAAGATAAGTTCTACTGGGTTGAAGGTTGTTAGGCTCTGTGCAAAGTCAAGAGAAGCGGTGAGTTCTCCAGTTGAGCACTTAACACTTCATTATCAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGCTACAACAGCTGAAAGACGAACAAGGTGAACTTTCCAGTAGTGATGAGAAGAAGTACAAAGCATTAAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTTATCTGCTGCACGTGTGTTGGTGCTGGAGATCCTCGGCTGGCAAATTTTAGGTTCCGTCAGGTACTTATCGACGAGTCTACTCAGGCAACAGAACCTGAATGTCTCATTCCTTTGGTGCTTGGGGTCAAGCAGGTTGTTCTTGTTGGTGATCACTGTCAACTGGGTCCAGTCATTATGTGCAAGAAGGCAGCTCGTGCAGGCCTTGCACAGTCACTTTTTGAACGACTTGTTCTGCTTGGTGTTAAACCAATCAGATTGCAGGTTCAATACCGTATGCATCCATCTCTCTCGGAATTCCCTTCGAATAGCTTTTATGAAGGCACTCTGCAAAATGGAGTTACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCCTGGCCAGTGCCCAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAAATAAGTGCAAGCGGCACATCTTATTTAAATAGAACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTGAGAAGTGGCGTAGTTCCTAATCAGATTGGTGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGCGCCCTCCGGCAACAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCTTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCATGCGTAAGAAGTAATGAGCATCAGGGCATTGGGTTTCTAAATGATCCCCGTAGGCTCAATGTTGCTCTGACCAGAGCTAGATATGGCATTGTCATTCTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTGTGGAATAGCTTGCTGACACACTTCAAGGAACATGAGTGCCTGGTGGAAGGGCCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGCGGTGGTCCTGGAGTTGCAGCCAGTGATAATTTTGGGTCAGTTGGCTCTGGCCCAACTTCTGATCGGAAGAGTGGCAGGGGCAGGGGGTCTTATATGCCTCCTGGCCCATCAAATGGAACCCATAAGCCTGGTGTGCATCCATCTGGGTATCCCATTCCAAGGGTACCTCTGCCACCTTTTGGTGGTCCCCAATCTCAGCCATATGCCATCCCAGCTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCACCTCCAGGCAGTCGGGGTTTTGGTGCTGGACGAGGTAGTTCTGGCGCCACGGTTGGCAATCATCTCCCACACCAGCAAGGCACCCAACAGTCTATGGGGAATCTTGGATCTGCTTTTAACTTTCCAGCTCTGGAAAATCCCAACAGTCAGCCATCTGTTGGTGTTCCATTGTCTCAACCTGGCTTTGCAAATAATATGCCAGTCCAAGGAGCAAGTCAGTCATTTAGAGATCAGTTTTCTGTGCCTGGAATGTCGCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTACTGATTTCTCTACCCAGGCTTCTCAGAGTGGGTATGCTGTTGATTATGTTACACAAGGAGCACAAGGTGGATTCCCTGGAAGCTTTTTGAACCAGAATTCCCAAGCTGGATACTCACGTTTTGGCTCTGGAAATGATTTTATGTCTCAGGACTATATGACCCATGGATCACAAGGCCTTTTCACTCAGGCTGGCTTCAATGATCCCTTGCAAGATGATGGGGCACAGAGCCAATTTGGTGTGGGCAATTCCAACCCTCTCCAGTCTCAGGGCTTGATGAATTCTCTCTACTCCCAACCTTTTGCTCACTACAACACGCAGCCGATGAACATGCAGGCTTCCCAGCCACAGCCTCAGGGTCAGAGCTCCCAAAATCAGAAAATACATTATAATGGTTGA 3804 0.4656 MDSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDSIRSPSAWPTPSDSLVDPLERGVGGGAGSDHQSDASPVSAAPGSATKNRATGSGSSGNSQMVDTLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDVGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHFKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVAASDNFGSVGSGPTSDRKSGRGRGSYMPPGPSNGTHKPGVHPSGYPIPRVPLPPFGGPQSQPYAIPARGAVHGPVGAVPHVPPPGSRGFGAGRGSSGATVGNHLPHQQGTQQSMGNLGSAFNFPALENPNSQPSVGVPLSQPGFANNMPVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTQGAQGGFPGSFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQAGFNDPLQDDGAQSQFGVGNSNPLQSQGLMNSLYSQPFAHYNTQPMNMQASQPQPQGQSSQNQKIHYNG 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00544 1267 Gene3D - 570 622 - -
Accr9g00544 1267 Pfam AAA domain 697 892 IPR041679 -
Accr9g00544 1267 Pfam Type III restriction enzyme, res subunit 490 554 IPR006935 GO:0003677|GO:0005524|GO:0016787
Accr9g00544 1267 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Accr9g00544 1267 Pfam AAA domain 583 687 IPR041677 GO:0004386
Accr9g00544 1267 MobiDBLite consensus disorder prediction 952 995 - -
Accr9g00544 1267 PANTHER DNA2/NAM7 HELICASE FAMILY 238 997 IPR045055 -
Accr9g00544 1267 Gene3D - 340 428 - -
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1 102 - -
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1198 1220 - -
Accr9g00544 1267 Gene3D - 719 930 IPR027417 -
Accr9g00544 1267 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1242 1267 - -
Accr9g00544 1267 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Accr9g00544 1267 Gene3D - 448 718 IPR027417 -
Accr9g00544 1267 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1 26 - -
Accr9g00544 1267 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1038 1082 - -
Accr9g00544 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 914 IPR027417 -
Accr9g00544 1267 CDD DEXXQc_UPF1 484 719 - -
Accr9g00544 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Accr9g00544 1267 CDD 1B_UPF1-like 340 427 IPR040812 -
Accr9g00544 1267 MobiDBLite consensus disorder prediction 73 102 - -
Accr9g00544 1267 MobiDBLite consensus disorder prediction 1049 1082 - -
Accr9g00544 1267 FunFam Regulator of nonsense transcripts 1 719 930 - -
Accr9g00544 1267 CDD SF1_C_Upf1 720 909 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00544 Accr-Chr9 6150588 6162302 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00544 K14326 - gmx:100795594 2375.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00544 9 6150588 6162302 Accr9g00544 9 6150588 6162302 ECH