Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00310 ATGGTATCCGAATCGGAGCTAATCGGCCGCCTCCGGGAATTTCTTCGCTGCTCCGACCTCAACACCACCACCACTGCTACGGTCCGCCGCCAGTTGGAGAACGATTTTGGAATTGATTTATCGGATAGGAAGGCGTTCATCAGGGAACAGGTCGACTTGTTCCTTCAAAGCGAGCGCGAGCAACCCGAGGAACATGAAGAACCCGAGGCTGAAGAAGATCAAAAGGACGAGCCTCAGCCGGAGCATGAATCAGAAGAAATCGAAGATTCTGATAATGAAATGCAAGACGATGAAGAACGAGATGAAGATACCGTAAAGCCTTCCGGGAATGGCAAGGACAAACGACGATCTAAAAGTTCAGGAAGTGAGGTGCGAAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCAGGAATTTGTTGGAGCACCAGAAATGGCAAGGACTGAGGTTGTTAAGCAATTATGGGCATACATAAGGGAGAAGAATTTGCAAGATGCAAATAACAGGCGGAATATAATTTGTGATGAACCATTACGTGCTCTTTTTAATGTTGATTCCATCAACATGTTTCAAATGAATAAAGCACTGTCAAAGCATATCTGGCCATTGGATTCCGATGATGTCATCCAGGTGAAGTCTGCACCAAAGGAAAAACAAAAGAAGCATGAGAGAGCAGAAGATCCTGATGAACCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTCAACTGTCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGCGCTAGTGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGCGATGAGAAGCTGAAAGAACTCTTCGACGTTGACTCCTTCAACGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 996 0.4418 MVSESELIGRLREFLRCSDLNTTTTATVRRQLENDFGIDLSDRKAFIREQVDLFLQSEREQPEEHEEPEAEEDQKDEPQPEHESEEIEDSDNEMQDDEERDEDTVKPSGNGKDKRRSKSSGSEVRKKGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDANNRRNIICDEPLRALFNVDSINMFQMNKALSKHIWPLDSDDVIQVKSAPKEKQKKHERAEDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRASVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00310 331 MobiDBLite consensus disorder prediction 218 249 - -
Accr9g00310 331 Pfam SWIB/MDM2 domain 134 205 IPR003121 -
Accr9g00310 331 Pfam SWIB/MDM2 domain 253 326 IPR003121 -
Accr9g00310 331 ProSiteProfiles SWIB/MDM2 domain profile. 249 328 IPR003121 -
Accr9g00310 331 FunFam Upstream activation factor subunit 125 213 - -
Accr9g00310 331 Pfam DEK C terminal domain 2 55 IPR014876 -
Accr9g00310 331 Gene3D - 1 58 - -
Accr9g00310 331 SMART swib_2 250 331 IPR019835 -
Accr9g00310 331 SMART swib_2 131 210 IPR019835 -
Accr9g00310 331 Gene3D SWIB/MDM2 domain 244 331 IPR036885 -
Accr9g00310 331 SUPERFAMILY SWIB/MDM2 domain 247 329 IPR036885 -
Accr9g00310 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 210 - -
Accr9g00310 331 MobiDBLite consensus disorder prediction 56 127 - -
Accr9g00310 331 CDD SWIB-MDM2_like 135 205 - -
Accr9g00310 331 MobiDBLite consensus disorder prediction 82 100 - -
Accr9g00310 331 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Accr9g00310 331 SUPERFAMILY SWIB/MDM2 domain 126 209 IPR036885 -
Accr9g00310 331 SUPERFAMILY DEK C-terminal domain 3 56 - -
Accr9g00310 331 ProSiteProfiles SWIB/MDM2 domain profile. 130 207 IPR003121 -
Accr9g00310 331 CDD SWIB-MDM2_like 254 326 - -
Accr9g00310 331 Gene3D SWIB/MDM2 domain 125 213 IPR036885 -
Accr9g00310 331 MobiDBLite consensus disorder prediction 101 123 - -
Accr9g00310 331 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00310 Accr-Chr9 3502680 3507220 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Accr9g00310 SWIB 7.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00310 K15223 - gmx:100786835 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00310 9 3502680 3507220 Accr9g00310 9 3502680 3507220 ECH