Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02423 ATGGCGAATCTGGTGAGTCCGACTCCCATAATTCACCATCTCCGCTTCAAATGCAGCACAATGGCGAAACCTTGCAACCCCGTCTTCCTTAAATTCTTCCCCAAATTTCCTTCTCTCCTCACTCAATTCCGTCTGTCTCCTGTTCGCATCTCATCAACTGATACATTTTCACAAAGTGCTTCCCTACAGCACAAAACCCTTCTTGTTGAGACTTACCATGAGCATCGCATCCTCAAATCCTTATTGCGAAAGCTTCATAAGCAAGATTCAAGCCCTCTCCACATACTCCAACAAGATGGAGATTGGTCCAAAGACCAGTTCTGGTCCGTCGTCAGGTTTCTTAAACATGCCGCCAGATCCAAAGAAATCCTTCAGGTATTTGATATGTGGAAGAAAATTGAGAAATCACGGATCAATGAAGTCAACTATAACAAAATAATACGTGTGTTGACTGAAGAAGGAATGATGGAAGAGGCTGTGGCTACCCTGCAGGAGATGAAAAATTATGGTCTTAAACCTTCTTCAGGTGCGTACAATCCAGTAATTCATGGTTTCTCCATGGAAGGCAGATTCAGTGATGCTTTGTTTTTCCTAAGTGAGATGAAAGCATCCAGCGTATTGCTGGACTCTGAAACCTATGATAGTTTAATTCAAGGCTATGGGAAGTTTAAGATGTATGATGAGATGAGCTTGTGTGTGAAAAGGATGGAGTTGGATGGATGTTCTCTTGGTCACACGACTTATAACATACTTATAAGAGAATATTCAAAAGGTGGACTACTTCAGAGAATGGAATCTGTATATCAAAGAATGCTTTCCAAAAAAACGTATTTGCATTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTCGGGATAGTTACAAAGATGGAAAAAATTTATCTTAAACTTTTGAACTCCGAAACCCCTTTAAAGGATGATTTAATAAGAAAACTTGCAGAAGTTTATATTGAGAATTATATGTATTCTAGATTAGAAGATTTGGGGATTGATTTACGTTCGACTTTTGGTGGGATTGAACTTGTTTGGTTTCTGCGCCTGCTTTCTTATGCTTGTCTTTTGAGTCGAAAAGGCATGGATGTCATTGTTGGAGGAATGCAGGAAGCCAAAGTTCAATGGAATGTTACACTTGCTAATACTATCATGCTGGCCTATGTGAAGATGAATGATTTCAAGCACTTGAGAATTTTTCTCTCTCAATTGTCAACCTATCGAGTGAAGCCTGACATAGTCACTATTGGAATTATTTTTGATGCAACTAGAAAGGGTTTTGATGGCAGTAGAACTTTGGAGAAGTGGAGAAGGATGGGCTATTTTCATAGAGTTGTAGAAATGGAAACAGATTCTCTGGTCCTTGCTGCGTTTGGGAAAGGTCATTTTCTTAAGACTTGTGAAGTAGTGTACTCTTCTCTGCACCCAGAGGACAGAGAAAGGAAAACATGGACTTATGAAGGCCTAGTTGATTTAGTATCTGAACATATTGAAGGTTGTGTCAGCCGTAGGACAACCAAATAA 1542 0.3975 MANLVSPTPIIHHLRFKCSTMAKPCNPVFLKFFPKFPSLLTQFRLSPVRISSTDTFSQSASLQHKTLLVETYHEHRILKSLLRKLHKQDSSPLHILQQDGDWSKDQFWSVVRFLKHAARSKEILQVFDMWKKIEKSRINEVNYNKIIRVLTEEGMMEEAVATLQEMKNYGLKPSSGAYNPVIHGFSMEGRFSDALFFLSEMKASSVLLDSETYDSLIQGYGKFKMYDEMSLCVKRMELDGCSLGHTTYNILIREYSKGGLLQRMESVYQRMLSKKTYLHSSTLVAMLEAYARFGIVTKMEKIYLKLLNSETPLKDDLIRKLAEVYIENYMYSRLEDLGIDLRSTFGGIELVWFLRLLSYACLLSRKGMDVIVGGMQEAKVQWNVTLANTIMLAYVKMNDFKHLRIFLSQLSTYRVKPDIVTIGIIFDATRKGFDGSRTLEKWRRMGYFHRVVEMETDSLVLAAFGKGHFLKTCEVVYSSLHPEDRERKTWTYEGLVDLVSEHIEGCVSRRTTK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02423 513 Pfam PPR repeat family 173 221 IPR002885 -
Accr8g02423 513 Gene3D Tetratricopeptide repeat domain 224 337 IPR011990 GO:0005515
Accr8g02423 513 NCBIfam pentatricopeptide repeat 247 275 IPR002885 -
Accr8g02423 513 NCBIfam pentatricopeptide repeat 212 242 IPR002885 -
Accr8g02423 513 NCBIfam pentatricopeptide repeat 143 174 IPR002885 -
Accr8g02423 513 NCBIfam pentatricopeptide repeat 178 209 IPR002885 -
Accr8g02423 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Accr8g02423 513 Gene3D Tetratricopeptide repeat domain 79 222 IPR011990 GO:0005515
Accr8g02423 513 PANTHER OS08G0520200 PROTEIN 53 502 - -
Accr8g02423 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Accr8g02423 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Accr8g02423 513 Pfam PPR repeat 142 171 IPR002885 -
Accr8g02423 513 Pfam PPR repeat 247 274 IPR002885 -
Accr8g02423 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g02423 102 428 Glycosyltransferase AT1G05670 18.155 7.19e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02423 - - qsa:O6P43_023602 630.557