Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02420 ATGTCGGAATTGGCGAACACAGATCCCGAAGGCATCGACGGAGTCCGCATGACATGGAACGCATGGCCTCGCACCAAGGTCGAAGCCAGCAAGTGCGTCGTCCCACTTGCTGCCAACATCTCCTTGATCCGCTCTCATCCTGACATTCCCCGCCTCCCTTATGCCCCTCTCCGCTGCAAGACCTGTTCGTCCATTCTCAATCCCTTCTCTCGCTTTGATTTCAACGCTAAGATCTGGATCTGCCCCTTTTGCTATCAACGCAATCATTTCCCCCCTCATTATAGTGCGATCTCAGAGACCAATGTCCCCGGAGAGCTCTATCCCCAGTACACCACTGTTGAATATGTGCTTCCTCTATCCTCCAACCCCAATTCATTCGGGAACCCCAATCTCGATCCAGCCCAGCAGTTGCAGCCTTCCCCTGTTTTTGTCTTTTTGCTTGATACATGCATGATCGAGGAGGAGATGGAGTTTGTGAAATCCGCACTTAGACAGGCGATCGGTCTTCTACCCGACAATGCTCTCGTGGGCTTCATTTCTTTTGGTAGCCAGGTTCAAGTTCATGAATTGGGTTTCTCGGACATGTCCAAGGTTTATGTTTTCCGGGGTAGTAAAGAGATTGCGAAAGAAAAAGTTTTGGAGCAACTGGGTCTGGGTGGGTCTGGGAGGAGACAGGCCGGCGCATATCAATCGGGGTTGAAGGGTGGATTCCCCCCTTCAGGTGTAACGCGGTTTTTACTGCCTGCATCTGATTGTGAATACACTCTTAATTTGCTACTGGATGAATTGCAAACCGATCAATGGCCTGTTCCACCAGCCAGTCGTCCTGCTCGGTGCACTGGAGTGGCTTTAAGCGTTGCAGCAGGACTGCTTGGTGCTTGCGTTCCAGGTACTGGGGCAAGAATCATAGCTTTGGTTGGGGGTCCGTGTACCGAAGGACCAGGCTCGATTGTGTCCAAAGATCTATCTGATCCAGTGCGTTCTCATAAAGATCTTGATAAAGACGCAACACCCTACTTCAAAAAAGCTGTAAAATTCTACGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCATGTTTTAGATCTTTTTGCATCAGCCCTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAAAGGACAGGTGGCCTTGTTGTTCTTGCTGAAAGTTTTGGTCATTCAGTTTTCAAGGATTCATTTAAGCGTGTTTTTGAGGATGGGGAGCAGTCACTTGGTCTTTGTTTTAATGGAACCCTTGAGATCAACTGCTCGAAGGAAATAAAAATTCAAGGAATTATTGGACCTTGCACATCATTAGAAAAGAAAGGGCCTTCAGTTGCTGATACTGTGATAGGAGAGGGGAATACAACAGCATGGAAGATGTGCGGCCTTGACAAGAGTACTTGCTTGACAGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAACAATCCAGGAACCATCAACCCACAGTTTTACCTACAGTTTCTTACAAGTTACCAGGGTCCTGATGGTCAATTAGCTCTTCGCGTAACTACAGTAACTAGAAGATGGGTAGATAGTCCTGCTAACTCTGAGGAATTGATACAAGGATTTGATCAAGAAACAGCTGCAGTTGTAATGGCTAGATACGTTTCTCTGAAAATGGAGATGGAGGAAGCATTTGATGCCACACGGTGGTTAGATCGACACCTCATTCGTCTCTGTTCAAAATTTGGGGACTACCGCAAGGATGACCCATCATCATTTACATTGAACCCATCATTTTCATTGTTCCCTCAGTTTATGTTCAATCTGCGACGATCACAGTTTGTACAGGTTTTTAACAATAGTCCAGATGAGACTGCCTACTTCCGCATGCTGTTGAACAGGGAAAACATTAGTAATGCTGCCGTCATGATTCAACCATCTTTAATATCATATTCATTCAATTCACTGCCTGCACCTGCGTTATTGGATGTATCTTCCATTGCTGCTGACAAGATTCTGTTGCTAGATTCATATGTTAGTATCGTCATTTTTCATGGGATGACAATAGCTCAGTGGCGCAACTTAGGATACCAGAACCAACCAGAACATCAGGCATTTGCACAACTATTACAAGCTCCACGTGATGATGCTCAAATCATCATTAGAGATCGTTTTCCTGTTCCTAGATTGGTAGTTTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAACCCCTCGGCAACATACAGCAATGCACACGAGATGGCTGCCGGTTCGGATGTGATCTTCACTGATGATGTGAGCCTTCAAGTCTTTTTTGAGCATCTTCAAAAGCTGGCTGTCCAATCTTGA 2340 0.4585 MSELANTDPEGIDGVRMTWNAWPRTKVEASKCVVPLAANISLIRSHPDIPRLPYAPLRCKTCSSILNPFSRFDFNAKIWICPFCYQRNHFPPHYSAISETNVPGELYPQYTTVEYVLPLSSNPNSFGNPNLDPAQQLQPSPVFVFLLDTCMIEEEMEFVKSALRQAIGLLPDNALVGFISFGSQVQVHELGFSDMSKVYVFRGSKEIAKEKVLEQLGLGGSGRRQAGAYQSGLKGGFPPSGVTRFLLPASDCEYTLNLLLDELQTDQWPVPPASRPARCTGVALSVAAGLLGACVPGTGARIIALVGGPCTEGPGSIVSKDLSDPVRSHKDLDKDATPYFKKAVKFYEGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNNPGTINPQFYLQFLTSYQGPDGQLALRVTTVTRRWVDSPANSEELIQGFDQETAAVVMARYVSLKMEMEEAFDATRWLDRHLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVSSIAADKILLLDSYVSIVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPRDDAQIIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYSNAHEMAAGSDVIFTDDVSLQVFFEHLQKLAVQS 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02420 779 Gene3D Sec23/Sec24 helical domain 532 776 - -
Accr8g02420 779 SUPERFAMILY Helical domain of Sec23/24 535 637 IPR036175 GO:0006886|GO:0006888|GO:0030127
Accr8g02420 779 FunFam Protein transport protein SEC23 140 416 - -
Accr8g02420 779 Pfam Sec23/Sec24 beta-sandwich domain 417 521 IPR012990 -
Accr8g02420 779 Gene3D - 53 112 - -
Accr8g02420 779 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 638 778 IPR036180 -
Accr8g02420 779 Gene3D Severin 637 741 IPR029006 -
Accr8g02420 779 Pfam Sec23/Sec24 helical domain 535 631 IPR006900 GO:0006886|GO:0006888|GO:0030127
Accr8g02420 779 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Accr8g02420 779 Gene3D von Willebrand factor, type A domain 140 415 IPR036465 -
Accr8g02420 779 FunFam Protein transport protein SEC23 53 112 - -
Accr8g02420 779 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 778 IPR037364 -
Accr8g02420 779 Gene3D - 10 518 - -
Accr8g02420 779 Pfam Sec23/Sec24 trunk domain 140 406 IPR006896 GO:0006886|GO:0006888|GO:0030127
Accr8g02420 779 FunFam Protein transport protein SEC23 637 741 - -
Accr8g02420 779 Pfam Gelsolin repeat 647 735 IPR007123 -
Accr8g02420 779 FunFam Protein transport protein SEC23 532 662 - -
Accr8g02420 779 SUPERFAMILY beta-sandwich domain of Sec23/24 8 534 - -
Accr8g02420 779 SUPERFAMILY vWA-like 141 407 IPR036465 -
Accr8g02420 779 CDD Sec23_C 627 747 IPR037550 GO:0030127|GO:0090114
Accr8g02420 779 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02420 Accr-Chr8 47841871 47848432 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02420 K14006 - qsa:O6P43_023603 1387.86