Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g02415 ATGGCTCCTCCCAAAGTTCTCATGGTCGCAGAGAAGCCTAGCATTGCTCTTTCTATTGCCTCTGTTCTCTCCCGCGGTCAGATGTCTACAAGAAAAGGAAGCACAGAAGTTCACGAATTTGAGGGGATATTTCTTGGATCCCGTGCACTCTTTAAAGTAACATCGGTTATTGGGCACATATTTAGTTTAGATTTTCCCCCTAAATATCAGGATTGGTCAGCTACAGATCCATCAGATCTTTTTCAAGCTCCAGTGATAAAGAATGAATCAAACCCAAAGGCACATATATGTAGACATCTAAATCAAGAAGCTCGTGGATGCCATTATTTGGTATTGTGGTTAGACTGTGATCGTGAAGGAGAAAGTATATGTTTTGAGGTTATAGAATCAACTAGCTTCAATGTAAATGAAGCTTGGAAGAGGATTTTTCGTGCACGCTTTTCTTCTGTTACAGAGAAGGATATTCTGACGGCTCTAGATAAACTTGTGGAACCCAACAGAGATGAGGCACTGGCTGTGGATGCTAGGCAGGAGATTGATTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACTAGTTATTTCCAGGGAAAATATGGGAATCTAGATGCCAGAGTTATATCCTATGGGCCATGTCAAACTCCTACTTTAGGCTTTTGTGTGCAGCAGTATTTACAAATAAATACCTTCAAGCCAGAAAAGTTTTGGACTCTGCATCCTTACATAATACACAATGGCTATGAAATTCAGCTAGAATGGAACCGGGGCAGATTGTTTGACATGGATATTGCTATTATGTTTCAAAAGATAGTAACTGAAAACGGACTTTTGGAGGTTACTGATATATCTGAAGAACAGAAAACCAAAAGCCGCCCTGTTGGTCTGAATACAGTCAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAGATGGCTATGCAACTAGCTGAGCGCTTGTATACTCAAGGTTTCATCAGCTATCCGCGCACAGAAAGCACAGCATACCCACCTTCATTTGACTTTCAGGGTGCACTGTCTGCACAAGCAAATAATCCAATATGGGGTCATTATGTACAGGCGCTACTCACCAATGGTTATCACAAACCTCGATTAGGAACAGATGTAGGTGATCACCCTCCTATCACCCCAATGCGGTCAACTTCTGAGGATGTGGTAGGAAGCGACGCATGGAAGTTATACCAATATGTCTGTCAACATTTTATGGGGACAGTTTCCCCTGATTGCAAGTATACAAGGAGAAAGGTAGAATTTTCAGTTGGTGGGGAGTCCTTTCATTGTACAGGGATGCATGTTACTGTCAAAGGATTTACAACTATTATGCCTTGGTTAGCGGTAAATGATAAAAATATTCCATCCTTTGCGAAAGGGCAGAAAATCGGAGTGTCAAAAATTGAGCTTTATGAGGGGACCACCACACCTCCAGATTATCTAAGTGAAAGTGAGCTGATTTCCCTTATGGAGAAGAATGGGATTGGAACTGATGCATCAATTCCTGTACATATCAACAACATCTGTGAACGAAATTATGTACAGGTACAAGCAGGCAGGAAACTTGTCCCAACTCCATTAGGTGTGAGTTTGATAAGAGGTTATCAGTCTATTGATCCAGACCTCTGCCTACCCGATATCCGTAGCTTCATTGAGCAGCAAATTACTCTTATAGCTAAGGGTCAGATACATCATTCTCGTGTTGTGCAGCATGTACTACAACAATTCATGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAATATGGATGCATTATTTGAAGCACAATTCTCTGCGCTTACTGATTCAGGGCGTACTCTTAGTAAATGTGGTAAATGCTTGCGGTATATGAAGTTCATTTCTTCTCAGCCACCACGATTGTATTGTAATACATGTGAGGAGGTTTATTATCTTCCACAGAAGGGAACAATCAAGCTGTACAAGGAACTGGCTTGTCCTCTGGACAACTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGCAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCTCCATTTGAGGGCATTGAAGCGCTCATCAATACGGCTAAAATTGGTGCTTCTGGCAAGCTAGGGAAGGGAGCTGGCATGCCATGCATCCTCTGTCCTCATCCCACTTGCCCAAACTCTTTGGTTTCTCAAGGGGTCTGTGCTTGCCCTGAGTGTAGTGGGACACTTTTCTTGGACCCAGTAAGCGCTCCCAACTGGCGACTCTGTTGCAATATGTGCAATTGCCTTGTTCTTCTTCCTCAAGGTGCTCATAGAATCTCCACAACTCGGGAACAATGCCCTGATTGTGACTCTACAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTTTGGAAGATGGAGCTACGCTGCACCGTGGTTGTGTTCTCTGTGATGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGCAAGAGTTTCAGTTCAAGAGGTAGAGGGAGAGGTAGGGGAAGGGGGAGGGGAAGGGGAGGTCGTGGTAGAGGGAAAATGATTGACCCAAGAATGAGTTTCCGAGACTTTTGA 2589 0.4311 MAPPKVLMVAEKPSIALSIASVLSRGQMSTRKGSTEVHEFEGIFLGSRALFKVTSVIGHIFSLDFPPKYQDWSATDPSDLFQAPVIKNESNPKAHICRHLNQEARGCHYLVLWLDCDREGESICFEVIESTSFNVNEAWKRIFRARFSSVTEKDILTALDKLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQQYLQINTFKPEKFWTLHPYIIHNGYEIQLEWNRGRLFDMDIAIMFQKIVTENGLLEVTDISEEQKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFQGALSAQANNPIWGHYVQALLTNGYHKPRLGTDVGDHPPITPMRSTSEDVVGSDAWKLYQYVCQHFMGTVSPDCKYTRRKVEFSVGGESFHCTGMHVTVKGFTTIMPWLAVNDKNIPSFAKGQKIGVSKIELYEGTTTPPDYLSESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGVSLIRGYQSIDPDLCLPDIRSFIEQQITLIAKGQIHHSRVVQHVLQQFMQKFSYFVKKIENMDALFEAQFSALTDSGRTLSKCGKCLRYMKFISSQPPRLYCNTCEEVYYLPQKGTIKLYKELACPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIEALINTAKIGASGKLGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLFLDPVSAPNWRLCCNMCNCLVLLPQGAHRISTTREQCPDCDSTIIEVDFNKKTTPLEDGATLHRGCVLCDELLHSLVEMKHGKSFSSRGRGRGRGRGRGRGGRGRGKMIDPRMSFRDF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g02415 862 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 625 IPR023405 -
Accr8g02415 862 MobiDBLite consensus disorder prediction 847 862 - -
Accr8g02415 862 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 MobiDBLite consensus disorder prediction 827 862 - -
Accr8g02415 862 MobiDBLite consensus disorder prediction 830 846 - -
Accr8g02415 862 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Accr8g02415 862 ProSiteProfiles Toprim domain profile. 5 150 IPR006171 -
Accr8g02415 862 Pfam Toprim domain 6 149 IPR006171 -
Accr8g02415 862 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Accr8g02415 862 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Accr8g02415 862 Gene3D - 2 165 - -
Accr8g02415 862 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 824 IPR000380 GO:0003677|GO:0003917|GO:0006265
Accr8g02415 862 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Accr8g02415 862 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 Pfam DNA topoisomerase 165 576 IPR013497 GO:0003677|GO:0003916|GO:0006265
Accr8g02415 862 FunFam DNA topoisomerase 3 165 - -
Accr8g02415 862 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Accr8g02415 862 SMART toprim5 5 136 IPR006171 -
Accr8g02415 862 FunFam DNA topoisomerase 291 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g02415 Accr-Chr8 47782816 47792719 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g02415 K03165 - gmx:100791807 1524.22