Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01689 ATGAAGATCAACGTTAACGCCGCCGCTCGCAAAGTGGAGGTTGACAATCGCATACCCCTCCACTATTATTACCGAATTGCCGATAATCTCCTCAAGCAGGCTAATATCTACCGAGAGGAGAACAATATAGTCGACTTGTATATCATTCTTCTCCGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAAACTTCACTTCCCAAAGAAAAAGCAGCATATAAGAAGAGATTGCTAGCTGTACTAGATGAGCTTGAATCTTTGAAACCAGAATTCAAACAAAAGGTTAACGAATTGAATGAGTTACATGGGAATGCTCACTTTCCCAAAGCTAATGACTCTAACAAGGCTCTGCACGGTTCGGTGACTCCATCTTTGGAATGGCCTGCTGTCAATAATAATTCTTACTCAAGAGTGGATTCTAAACAGCTGCTGCCTGCTGGGTTGGGTCTGCAGTCTTCATGGAAATTTAATAGTAATTCTGGTCATTACGTATCTTCAAATGCTGTGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTTTACCTGTTCCAAAGGAGGAGACTCTATCCAGACACTCATTTTTGGGACGAAATGGTCTTCGGGCACAGTGGCTTGGACCAAGTGCAGGAATGAAGGTTAACTATCCAAGCAGCAGTGATTTGACTATTGCCGAGAATTCAAGTCTGAATCAGGATGGAAAATATGATCTTGTGGGAGTTAAAGAGGGTGATCCAGGAGCAGGCATGTCCACAATGGATTCAGTGCTCTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATGTCCTCCTCTATTGAATGAATTAGAGGACAGTCAATTCCATTCGCTCAACATTAGGCAGCCTTCACCTCCTCCAGTTCTTGCTCAGGTTCAGCCAGAATATGCCCCAATTCCTCCTTCACGAGTTGCAGATCCAAGACCAGGACCGGCTAAGTCTTCTCCAGATTCTCCAGTTGGTTCTGCTGCATATCAGCACCTACATATTCCTGTCAAAATGATGGATGATTTTTTGAGATTGGCTCTCGAAAATACACAGAAAAACCTAGAGACTTGTGGTGTTCTTGCAGGGTCCCTCAAAAACAGGGTTTTCCATATTACTACACTCATAATCCCAAAGCAGGAATCAACAACTGACACGTGCCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAAGACCGTTTATCACTTTTTCCTTTAGGCTGGATACATACACACCCATCTCAGTCTTGTTTCATGTCATCAGTTGATCTCCATACACATTACTCATACCAGATCATGTTACCAGAGGCAATCGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGCATATTTCATCTCTCTGATCCTGGCGGTGTATCAGTAATTCGCAACTGTCAGCAACGTGGGTTTCATCCCCATGAGGAGCCTTCTGATGGAAGCGCAATTTATGAGCATTGCTCTCATGTCTTTATGAACGCTAACATGAAATTTGATGTTGTTGACCTTCGGTAG 1551 0.4288 MKINVNAAARKVEVDNRIPLHYYYRIADNLLKQANIYREENNIVDLYIILLRFSSLVSETIPFHRDYQTSLPKEKAAYKKRLLAVLDELESLKPEFKQKVNELNELHGNAHFPKANDSNKALHGSVTPSLEWPAVNNNSYSRVDSKQLLPAGLGLQSSWKFNSNSGHYVSSNAVPIDKQFQKLSLSLPVPKEETLSRHSFLGRNGLRAQWLGPSAGMKVNYPSSSDLTIAENSSLNQDGKYDLVGVKEGDPGAGMSTMDSVLSLDDGSWSRPADESCPPLLNELEDSQFHSLNIRQPSPPPVLAQVQPEYAPIPPSRVADPRPGPAKSSPDSPVGSAAYQHLHIPVKMMDDFLRLALENTQKNLETCGVLAGSLKNRVFHITTLIIPKQESTTDTCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQSCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSAIYEHCSHVFMNANMKFDVVDLR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01689 516 SUPERFAMILY JAB1/MPN domain 341 472 - -
Accr8g01689 516 FunFam AMSH-like ubiquitin thioesterase 3 1 116 - -
Accr8g01689 516 CDD MPN_AMSH_like 339 516 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Accr8g01689 516 MobiDBLite consensus disorder prediction 312 336 - -
Accr8g01689 516 PANTHER AMSH-LIKE PROTEASE 3 516 - -
Accr8g01689 516 FunFam AMSH-like ubiquitin thioesterase 3 327 516 - -
Accr8g01689 516 Pfam USP8 dimerisation domain 6 99 IPR015063 -
Accr8g01689 516 Gene3D - 3 123 - -
Accr8g01689 516 ProSiteProfiles MPN domain profile. 342 472 IPR037518 -
Accr8g01689 516 Gene3D Cytidine Deaminase, domain 2 327 516 - -
Accr8g01689 516 SMART pad1_6 341 469 IPR000555 GO:0005515|GO:0008233|GO:0008237
Accr8g01689 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 338 445 IPR000555 GO:0005515|GO:0008233|GO:0008237
Accr8g01689 516 Coils Coil 86 106 - -
Accr8g01689 516 MobiDBLite consensus disorder prediction 249 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01689 Accr-Chr8 39060278 39066839 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01689 K11866 - pvy:116122857 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01689 8 39060278 39066839 Accr8g01689 8 39060278 39066839 ECH