LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g00821	ATGGCTGAAACCGGTATCGTCCGGTTTCCGGGCAGCTTAGACCCTCGAGCGGAAGAGTTTACGCCGAGAAATCAAACAACGCTGTACCGGCCAGCTCAACTGCTCTACCCTTGCGTGCCCACCGCCGGCGTTCAGCTTCAGCCGCTGCCTTTTTGTAATATTGCAGCTCCGGTCGGTGTTCCGTATCCGCTGTTCTGCTCCCCCCCGGCGTACGTTGGCCAACTACCTCCGCCGGCCGCGCCGTCTCCGTCTCCGTCTCCGTTTTCGTCGTCCTCGCCCACGCGGTCTCTGCTGCTCAGCTCGGTGCCGGCGGAGGTGGTGGTGAGTGAGTCGTTGTTGCGGCGAGAATTGGAGGTTTTCGGAGATGTTAGAGGCGTTCAGATGGAGAGGGTTCGAGAAGGAATAGTGACTGTTCATTTCTACGACCTGAGAAATGCAGAGACGGCGTTAATGGCGATTCGGAAGCAGCACATGCAACACCAGACCAGGCTCCGTAATTTCTATTCCTCCGTGTTGAAGTCTCGCCATTCCGCGTTGGAGCTGGACTGTTACTCCGTCACCGCCCCACTCCCTCCGCCGGCGCGTGGGCTGGTCGCCGGTCGTCCGGTGTGGGCCCAGTACATTGCCCCAGCTCCCAACGCCGTCCCCCAGGGCCAGAACCAAGGCACCATCGTGATTTTCAATTTAGATTCGACGGCGTCCTCAGAAATACTCCAGCAAACTTTCGAGGCATTTGGTCCTGTGAGGGAACTAAGAGAGACGCCATCAAAGAAGAATCAGAAGTTTGTGGAGTTCTTTGACGTCAGAGATGCGGCCAAGGCCTTGGAGGAGATGAACGGCAGGGAAATTAACGGAAACTCCGTCATTATTGAGTTCAGTCGTCCCGGTGGTGGTCATGGCCGAAAGTTCTTCAACCACCAACAGACTGTCTCCAAAAACGCAGTGCCGTTGAGCTACCGACCCCCTTCTCCTCCTGCCTTTCCACCTTCTCCGCCTACACCACTGGCCCACAAAAACGCACATCGTTTTTCTCATCTTCCCCAGCCCCAATTGTCGTGCAGGAAAACAGCTGGCAACAAGGGTCGTAACGGTGGTGAAGACACAGTTTCTTTGGAATCGACGAATTTGAGTGAGGTGGAAGAGAATCCACCGGAAGTGGCTGCAGCGAGAAACGCTGCAGCGAAGAACTGTGTGGGTGAGGCCACTGCAACGGCGGCGGTGGGAAGCACGAAGCAGCATCAACAGCAACTACCCAGAAGTAGGAATTGGAAGGGGAAGCAAGGGAGGAAGCTGGAAACAAGGTTTCTAATTAAGGAAGATGCGATTGTGGAATCGAGTAATAAAGATTCCAGAACTACTGTCATGATCAAGAACATACCGAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAATCACTGCATCCACTGCAACGAGCAGATTGGCGACGGCGACGACCAACCCTTGTCCTCTTACGATTTCGTCTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACATCGCCAGAGGCTACGATGAGGTTGTATAAAGCATTTCATCTTCAACATTGGGAAGTCTTTAACTCGAGAAAAATATGCCAGGTCACATACGCCAGGGTTCAGGGTTTGGAAGCGTTGAAAGAGCATTTCAAGAACTCCAAGTTCCCATGCGAGATAGAGCATTACTTACCGGTGGTGTTTTCTCCGCCGCGAGATGGGAGGCAGTTGACGGCGCCACTTCCGATCGTGGGTCAGAAGCAGCCTGGAGAAGCCACTGATGGGGCTTCCGACTGTAAGGCAATTAATGATGACGATGTCGGTGGTACGGTGGACGATAAAAATAGCACAGCAGCAGCAGGCGGCGGCGAACAGAAGCAGAACATGCAGAGCAGCAGAAAAAACGGCGGCGGGGAGGGTGATGATGATGGTGACGACGTTGACAGAAGAAGAAATAGCGAAGGTGGAGAAGAAATCGGAAGGGATTAA	2016	0.5347	MAETGIVRFPGSLDPRAEEFTPRNQTTLYRPAQLLYPCVPTAGVQLQPLPFCNIAAPVGVPYPLFCSPPAYVGQLPPPAAPSPSPSPFSSSSPTRSLLLSSVPAEVVVSESLLRRELEVFGDVRGVQMERVREGIVTVHFYDLRNAETALMAIRKQHMQHQTRLRNFYSSVLKSRHSALELDCYSVTAPLPPPARGLVAGRPVWAQYIAPAPNAVPQGQNQGTIVIFNLDSTASSEILQQTFEAFGPVRELRETPSKKNQKFVEFFDVRDAAKALEEMNGREINGNSVIIEFSRPGGGHGRKFFNHQQTVSKNAVPLSYRPPSPPAFPPSPPTPLAHKNAHRFSHLPQPQLSCRKTAGNKGRNGGEDTVSLESTNLSEVEENPPEVAAARNAAAKNCVGEATATAAVGSTKQHQQQLPRSRNWKGKQGRKLETRFLIKEDAIVESSNKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATMRLYKAFHLQHWEVFNSRKICQVTYARVQGLEALKEHFKNSKFPCEIEHYLPVVFSPPRDGRQLTAPLPIVGQKQPGEATDGASDCKAINDDDVGGTVDDKNSTAAAGGGEQKQNMQSSRKNGGGEGDDDGDDVDRRRNSEGGEEIGRD	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g00821	671	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	333	617	-	-
	Accr8g00821	671	SUPERFAMILY	RNA-binding domain, RBD	222	530	IPR035979	GO:0003676
	Accr8g00821	671	Gene3D	-	211	294	IPR012677	-
	Accr8g00821	671	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	222	295	IPR000504	GO:0003723
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	629	644	-	-
	Accr8g00821	671	FunFam	Terminal EAR1-like 1	398	557	-	-
	Accr8g00821	671	Pfam	RNA recognition motif 2	451	561	IPR007201	-
	Accr8g00821	671	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	95	171	IPR000504	GO:0003723
	Accr8g00821	671	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	224	287	IPR000504	GO:0003723
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	586	671	-	-
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	318	335	-	-
	Accr8g00821	671	SMART	rrm1_1	96	165	IPR000504	GO:0003723
	Accr8g00821	671	SMART	rrm1_1	223	291	IPR000504	GO:0003723
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	315	369	-	-
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	645	671	-	-
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	406	422	-	-
	Accr8g00821	671	SUPERFAMILY	RNA-binding domain, RBD	75	159	IPR035979	GO:0003676
	Accr8g00821	671	MobiDBLite	consensus disorder prediction	406	425	-	-
	Accr8g00821	671	CDD	RRM3_EAR1_like	451	552	IPR034458	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g00821	Accr-Chr8	15027331	15030159	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g00821	-		-	adu:107469016	654.055

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr8g00821	8	15027331	15030159	Accr8g00821	8	15027331	15030159	ECH