Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00756 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAAGCTCTTGGAGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTCGAGAATTTTGGCAATACTTGTTACTGCAACAGTGTTTTGCAGGCACTGTACTTTTGTGTTCCATTCCGTGAACAATTGCTAGAGTATTATGAAAATAATAAAACCCCTGGGGATGCAGAAGAAAATCTTTTAACTTGCTTAGCAGACTTGTTTTCTCAGATAACTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTAAAAAAACAGAATGAACTCTTTCGAAGCTATATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAAGAGTCACAGGCTGCAAAAAGAGATCAAGAGACCTCACCCCCTTCTGATCCTGCAAAAGTACCTGAGAATGGTTTAGCAAATGGTAGTAAAAAGGAGCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAGACAAGGTGCTTACGTTGTGAAACAGTGACGGCTAGGGATGAAATATTTTTTGACTTGAGCCTTGATATTGAGCAGAACAGTTCAATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCCGAAGACAAATTCTTTTGTGATAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCGCCTCACATCTTGGTCATCCATCTCAAGCGGTTCAAGTACGTTGAACAGCTGGGTCGAAACAAGAAGCTATCGTACAGGGTTGTCTTCCCTCTTGAGCTGAAGTTGGGCAACACTGTAGAAGATGCAGACAATGAATATTCCCTATTTGCAGTGGTTGTTCATGTTGGCAGCGGGCCTAACCACGGACATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTCGAGATGATCGATGAGTCTGCTGTGCAGACATTCTTTGGCTCAGCACAGGAGTATTCCAGTAACACAGACCATGGGTACATTTTGTTCTACGAGAGCCTCAGCTTGGGATTCGAGAACTAG 1107 0.4282 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYENNKTPGDAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESQAAKRDQETSPPSDPAKVPENGLANGSKKEPLVTWVHKNFQGILTNETRCLRCETVTARDEIFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTVEDADNEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLSLGFEN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00756 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
Accr8g00756 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 362 - -
Accr8g00756 368 MobiDBLite consensus disorder prediction 132 158 - -
Accr8g00756 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Accr8g00756 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
Accr8g00756 368 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 361 - -
Accr8g00756 368 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Accr8g00756 368 Gene3D Cysteine proteinases 5 361 - -
Accr8g00756 368 CDD Peptidase_C19G 24 360 - -
Accr8g00756 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00756 Accr-Chr8 12921506 12928696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00756 24 333 Miscellaneous Gene Families AT4G31670 26.498 4.76e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00756 K11842 - gmx:100305765 692.575