Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00621 ATGCTGAGTTTTAAAAATGATGGAGATATTATTTATGATGATGATGATGATGATGTGTTCTTCGACTCAGCAGATTATCTGTTACCTCAAGAACTTTCTGATTTAGGTTCAAACGAGTTGGATTATGAGATTTGGGTGAATGAACCTCAAAGTGTGAAGGAAAGACGTCGACGTTTTCTTGAGGGAATGGGTTTTCCTGGCTTATCAGATATGTCTTCAAAAACATCCTTGGAACCACAGATAAGCATTAGGGACAACAATAATGGAGCTGTCTCAAATAATGTAGTTGAGAAAGAAACTTCTGAAGCAAACATGTTTGATGAAATGACAATGTTTCCTAAAGAAGATGTAAGCTTTCATAAAACCAGACACACAGAATCTGAAGTCCAACAAAGACATGCGGATCTAGATATGGAACAGAAGAAGAAGAATAAATGGTGGGAGAGATTTGTGAACAAGAAAAAAGAAAGTGGGGCAAATAAGAGTCATAGGATAAAAGTGAGGCAGAACAAGAAGAGGTGCAAGGAGTTAAGTGGCTTATATGTTGGACAAAAGATTATAGCTCACAATGGCATTATATGGACTATGAAATTCAGTCCCAATGGGCAGTATCTTGCGACGGGAGGCGAAGATGGAGTCGTAAGAATATGGCGTGTCGTGTTACAGGACATATCTAGTGACTGTTTCAATGCAGAGGACAGTGTAGTTACCAAAGTCAAACAAGACATGTTCTGTTCTTGGAAGAAACAGTTAGGTCAAAGAAACTGCCTTGTCCTTCCAAACAAGGTTTTTCAAATTGAGGAATCACCAATGCAAGAATTCTATGGTCATTCTAGTGATGTCTTGGACTTGGCATGGTCTGATTCAGATATTCTCCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAAATTGGATGTGATCAGTGCTTAAGTGTTTTTTGTCACAATGATTATGTGACATGCATTCAAGTGAATCCAGTTGATGGAAATTACTTCATAAGTGGGTCCATTGATGGCAAAGTCAGAATATGGGGATTACATGAAGAGAGGGTTGTTGACTGGGTGGATATACATGAAGTGATAACTGCCATAAGTTACAGGCCAGATGGGAAAGGATTTGTAGTCGGCTCCATTTCAGGCACTTGCCGCTTTTATGTTACTTCAGATGAACATTGCAGATTTGAGGCACAGATTCATGTTGATGGAAAGAAGAGATCAAGGGGCAGCAAAATTAGTGGAATTCAGTTTTCCCAGGAGAGACATCAGAGAGTTCTGATCATATCAGAAGATTCCAAATTTTGCTTACTGGAAGGGATTGATGTTGTCCACAAATACAGAGGTCTTCCTAGGTCAGGAAGTCAGATGTGTGGTTCATTTACAAGTGGAAAACACATAATTTCAGTTGGAGAGGATTCTCATGTGTACATTTGGAACTCATGTGACTTACAAAACCCATCACCTAAACACAAAAAATCCACTGGGTTTTGTGAATACTTTTTCTCAAAAGGTGTTGTTGTGGTAGTACCTTGGTCAGGCATGAGCACAGAACAAATGGTCACTACTGGTTTAACACAGTACAGTTCTTCAGACTTACTACAACCTCAAATGCTTGAAGATAGAGTTAGAGGACAGTGTTTTCCTCATAGCAATTGGTTCTCGATTGATCACACATGTCGGGGTTCTATGACCTGGCCTGAAGAGAAACTTCCTACATGGACTTCGCCTTCTACCGAAGAAGAAGAAGATGCTTATTATAGTCATCATCAACAGAAGAAGCTATGTCCAAAGGATCCTTGGGGTTTGTCAATTGTAACAGCTAGTTGTGATGGGACTCTAAGGACATTTCACAACTTTGGATTGCCTGTTCGGCTGTAG 1881 0.3977 MLSFKNDGDIIYDDDDDDVFFDSADYLLPQELSDLGSNELDYEIWVNEPQSVKERRRRFLEGMGFPGLSDMSSKTSLEPQISIRDNNNGAVSNNVVEKETSEANMFDEMTMFPKEDVSFHKTRHTESEVQQRHADLDMEQKKKNKWWERFVNKKKESGANKSHRIKVRQNKKRCKELSGLYVGQKIIAHNGIIWTMKFSPNGQYLATGGEDGVVRIWRVVLQDISSDCFNAEDSVVTKVKQDMFCSWKKQLGQRNCLVLPNKVFQIEESPMQEFYGHSSDVLDLAWSDSDILLSSSMDKTVRLWQIGCDQCLSVFCHNDYVTCIQVNPVDGNYFISGSIDGKVRIWGLHEERVVDWVDIHEVITAISYRPDGKGFVVGSISGTCRFYVTSDEHCRFEAQIHVDGKKRSRGSKISGIQFSQERHQRVLIISEDSKFCLLEGIDVVHKYRGLPRSGSQMCGSFTSGKHIISVGEDSHVYIWNSCDLQNPSPKHKKSTGFCEYFFSKGVVVVVPWSGMSTEQMVTTGLTQYSSSDLLQPQMLEDRVRGQCFPHSNWFSIDHTCRGSMTWPEEKLPTWTSPSTEEEEDAYYSHHQQKKLCPKDPWGLSIVTASCDGTLRTFHNFGLPVRL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00621 626 Gene3D - 171 518 IPR015943 GO:0005515
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 219 - -
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 348 - -
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Accr8g00621 626 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Accr8g00621 626 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Accr8g00621 626 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Accr8g00621 626 PANTHER WD REPEAT DOMAIN 44 114 623 IPR040324 -
Accr8g00621 626 Pfam WD domain, G-beta repeat 186 217 IPR001680 GO:0005515
Accr8g00621 626 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Accr8g00621 626 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 219 IPR001680 GO:0005515
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Accr8g00621 626 SUPERFAMILY WD40 repeat-like 183 616 IPR036322 GO:0005515
Accr8g00621 626 SMART WD40_4 179 218 IPR001680 GO:0005515
Accr8g00621 626 SMART WD40_4 440 480 IPR001680 GO:0005515
Accr8g00621 626 SMART WD40_4 267 305 IPR001680 GO:0005515
Accr8g00621 626 SMART WD40_4 308 347 IPR001680 GO:0005515
Accr8g00621 626 SMART WD40_4 350 388 IPR001680 GO:0005515
Accr8g00621 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 356 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00621 Accr-Chr8 9883410 9886070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00621 170 387 Miscellaneous Gene Families AT5G08390 22.566 2.51e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00621 K20241 - gmx:100780979 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00621 8 9883410 9886070 Accr8g00621 8 9883410 9886070 ECH