Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00600 ATGAGGGGTGGAACTTTACAAATAAACTGGCATGAAACAAAACCAGTCCTTTCCCTTGATTTCCACCCACTCACCGCCACTCTCGCCACCGGCGGCGCCGATTTCGACATCAAGCTTTGGTCTGTAAAACCTGCAGAGGCACAAAAGAAACTACCTTTAGTGTCCTATCTGAATAGCTTGTCTTACCATAGTTCTGCAGTAAATGTAATTCGCTTCTCCTCTTCAGGGGAACTCTTGGCCTCTGGTGCTGATGGAGGTGAACTTATAATATGGAAGTATCATGTCACAGATACAGATCAGACATGGAAGGTTCTCAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAATGGTCTCCTGATGGCACATTTTTAATTTCAGGGTCAGTTGATAATAGTTGCATTATATGGGACATTAACAAAGGCACCAATCTTCAGACGTTGGATGCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGAAATATGTTGCTTCTCTAAGTTCGGACAGAACTTGCCGAATTTACTTTAATAAACCTAAAAAATCTAAAGGAAGTGGGAAAATCAATTATGTCTGCCAGCAAGTTATTTCCAAGGCAGTACATCCATTACTAGATAATTCTAAGACAACAAATTATCATCTTTTCCATGATGAGACACTGCCATCTTTTTTCAGAAGACCAGCGTGGTCTCCTGATGGCTCGTTTCTTGTTGTTCCTGCAGGCTCATATAAAATTACTTCTGGATCTGAATCTGTAAATGCAGCTTACGTATTTTCTAGAGAGGATCTATCTCGGCCTGCCATACAGCTTCCTTGTGCAAACAAAGCTGTTGTTGCTGTCCGATTCTGCCCTATTAATTTCAGCCTTCGTGGGACAAATTCAGCTGGGTTATTTAAGCTTCCCTATCGCCTCATTTTTGCGGTGGCCACTTTGAATTCGTTGTACATTTATGACACTGAGAGCAATCCTCCCATAGCTATTATGGCTGGTCTCCACTATGCACCAATAACAGACATTGCATGGTCACCTGATGCTCATTATTTGGCATTGTCCTCTCAAGATGGTTTCTGCACTTTGGTGGAATTTGAAAATAATGAATTAGGAACACCTATCTCTTCATCAGGAGAAAAGAAGGTTTCTGACAAGGATAAGACACATCCAAAGACATCTGACAACTTAGTCATTGAAGGTACTGGGAATATTAGTGCAGCTGAAAAAGAAAGTGTGAAAAATGAAGCTGGAGTAAAGACTGATGACATGATCATTGAATCAACTAGCTATGTTGGTGTAATTAATGAAGGAATCAGGAAAGCTGAAGCAGAAGAGCAAGGGGACGACATGGTCATAGAAGTAACTGGAAATGCTGGGGCAGTTGCTGCAGAACGCATGAAAAGGGAAGCAGAAGAGAAGGCTGACTACATGGTCATTGAGGAAACCACCAATGTTAGTGGAGTTGAGGCAGCTGGCAGGAAAAATGAGGCACAAGAGAAGGCTGATGACATGGTCATTGGGGAAACGAGCAATGTTGGTGGAGTCGTGGCAGCAAGCCGGGAAAACGCAGCAAAAGATAAAGCTGTTGTAATCATCGAAGAAAGTGGGAATGTTGGTGCAGTTGTAGTGGATAGCAGTAAAAATGAAGCAGAGAAACAGCCAGTAAGTTCAGATAGTGTGAAATCAGATGAGCAAGGCAAGACTGAGAAACACCCATCTGTGGATGCTCTAAGAAAAGAAGCTGAAGAGAAGATAGAGAAACAAACATCTTGTTTAAATAAAAGGGAAGGAGAAGAAAGGGTAGCATCTAGTTCAAGGGGAACGGCAACATCAAATAAGACAGGCAAAAAGCGTATTACTCCTATTGCCATTGATCCATGA 1890 0.4222 MRGGTLQINWHETKPVLSLDFHPLTATLATGGADFDIKLWSVKPAEAQKKLPLVSYLNSLSYHSSAVNVIRFSSSGELLASGADGGELIIWKYHVTDTDQTWKVLKMLRSHHKDILDLQWSPDGTFLISGSVDNSCIIWDINKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYFNKPKKSKGSGKINYVCQQVISKAVHPLLDNSKTTNYHLFHDETLPSFFRRPAWSPDGSFLVVPAGSYKITSGSESVNAAYVFSREDLSRPAIQLPCANKAVVAVRFCPINFSLRGTNSAGLFKLPYRLIFAVATLNSLYIYDTESNPPIAIMAGLHYAPITDIAWSPDAHYLALSSQDGFCTLVEFENNELGTPISSSGEKKVSDKDKTHPKTSDNLVIEGTGNISAAEKESVKNEAGVKTDDMIIESTSYVGVINEGIRKAEAEEQGDDMVIEVTGNAGAVAAERMKREAEEKADYMVIEETTNVSGVEAAGRKNEAQEKADDMVIGETSNVGGVVAASRENAAKDKAVVIIEESGNVGAVVVDSSKNEAEKQPVSSDSVKSDEQGKTEKHPSVDALRKEAEEKIEKQTSCLNKREGEERVASSSRGTATSNKTGKKRITPIAIDP 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00600 629 CDD WD40 13 361 - -
Accr8g00600 629 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Accr8g00600 629 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Accr8g00600 629 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Accr8g00600 629 SMART WD40_4 53 92 IPR001680 GO:0005515
Accr8g00600 629 SMART WD40_4 327 367 IPR001680 GO:0005515
Accr8g00600 629 SMART WD40_4 3 41 IPR001680 GO:0005515
Accr8g00600 629 SMART WD40_4 269 324 IPR001680 GO:0005515
Accr8g00600 629 SMART WD40_4 101 140 IPR001680 GO:0005515
Accr8g00600 629 SMART WD40_4 143 182 IPR001680 GO:0005515
Accr8g00600 629 MobiDBLite consensus disorder prediction 547 629 - -
Accr8g00600 629 Gene3D - 184 417 IPR015943 GO:0005515
Accr8g00600 629 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 629 IPR045145 GO:0006335
Accr8g00600 629 SUPERFAMILY WD40 repeat-like 11 365 IPR036322 GO:0005515
Accr8g00600 629 Gene3D - 3 183 IPR015943 GO:0005515
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Accr8g00600 629 MobiDBLite consensus disorder prediction 606 620 - -
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Accr8g00600 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Accr8g00600 629 MobiDBLite consensus disorder prediction 382 396 - -
Accr8g00600 629 MobiDBLite consensus disorder prediction 376 406 - -
Accr8g00600 629 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Accr8g00600 629 MobiDBLite consensus disorder prediction 557 605 - -
Accr8g00600 629 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Accr8g00600 629 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Accr8g00600 629 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Accr8g00600 629 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Accr8g00600 629 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00600 28 181 Miscellaneous Gene Families AT5G08390 29.221 3.48e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00600 K10751 - gmx:100784411 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00600 8 9454437 9459617 Accr8g00600 8 9454437 9459617 ECH