Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00921 ATGGGTTTGATTTCTGGGCTCTTTTTGGGGATAACACTCGGCATCGCTTTGATGTATGGATGGCAATATATGATGAAGTACCGAAGGGCCAAGCGGATTGCGAAGGCAGTTGATATCAAACTCCTTGGATCCCTTGATAGAGATGATATAAGAAAAATCTGTGGTGATAATTCTCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGCAGCTGAGCAAACTGTGGCCATCTGTGGCAGAAGCTGGATCAATGGTGATCAAAGAATCTGTTGAACCACTACTTGAAGAGTACAGACCTGCCGGAATTACTTCATTGAAATTCAGCAAGCTGTCTCTTGGAAACGTTGCTCCAAAGATTGAAGGTATTCGTGTTCAGAGTCTTAAGAAAGGCCAAATCATAATGGACATTGATTTCCGATGGGGTGGTGATCCCAGCATTATTTTGGCTGCTGAAGCGGCACATGTTGCTTCAATCCCCATCCAGTTGAAAGATCTCCAAGTTTTCACGATTATCCGTGTTATCTTCCAACTTGCTGAAGAGATACCCTGTATCTCTGCCGTTGTTGTTGCCCTGCTTGCTGAGCCAAAACCTCGGATTGATTACACTCTTAAAGCTGTTGGAGGAAGTTTGACAGCTATTCCTGGATTATCAGATATGATTGATGACACTGTGGAATCAATAGTTACTGATATGCTTCAATGGCCTCATAGGATCGTTGTTCCACTTGGCGGTGTACCTGTTGATACCAGTGAACTGGAGCTTAAACCTCAGGGAAATCTCACAGTGAATGTTCTGAAAGCCAATGATTTGAAGAATATGGAAATGATTGGGAAATCTGATCCATATGTAGTTGTGCATATTCGACCCTTATTTAAGGTTAAAACCAAGGTTATTGACAACAACCTGAATCCTGTTTGGAATGAGACGTTCAACTTGATTGTTGAAGACAAAGAGACTCAGTCAGTCATTCTAGAGGTTTTTGATGAAGATATTGGGCAAGATAAGAGATTGGGAGTAGTAAAATTACCCCTTGTTGATCTCGAGTCAGAAACTGAAAAGGAAATTGAGTTGAGGCTGCTGCCTTCGCTGGACACACTTAAAGTAAAAGATAAGAAGGACCGAGGATCATTGACAATTAAGGTCTTATACCATCAATACAATAAAGAAGAGCAGTTGGAGGCTCTAGAAGCAGAGAAGAGGATACTAGAAGCAAGGAAGAAGCTGAAAGAGGAAGGAGTTATAGGAAGCACCATGGATGCTATAGACGGAGCAGCATCGCTTGTTGGTTCTGGTGTAGGAATGGTTGGTACCGGTGTTCTTACTGGTGCTGGCCTTGTTGGAAGTGGCGTTGCTGGTGGGGTGGGGCTTGTAGGCACCGGTCTTGGAGCCGTTGGCAGTGGATTGAGCAAGGCGGGTAAGTTCATGGGCCGGACTATCACGGGAGGACATAGCAGTGCGAGGAGGAGTGGCGCAACTACTCCTGTCAATAATGCTCAGGAAAATGGCAGCGGTGCAAAGCCTCTGTGA 1545 0.4421 MGLISGLFLGITLGIALMYGWQYMMKYRRAKRIAKAVDIKLLGSLDRDDIRKICGDNSPEWISFPVYEQVKWLNKQLSKLWPSVAEAGSMVIKESVEPLLEEYRPAGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQIIMDIDFRWGGDPSIILAAEAAHVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVESIVTDMLQWPHRIVVPLGGVPVDTSELELKPQGNLTVNVLKANDLKNMEMIGKSDPYVVVHIRPLFKVKTKVIDNNLNPVWNETFNLIVEDKETQSVILEVFDEDIGQDKRLGVVKLPLVDLESETEKEIELRLLPSLDTLKVKDKKDRGSLTIKVLYHQYNKEEQLEALEAEKRILEARKKLKEEGVIGSTMDAIDGAASLVGSGVGMVGTGVLTGAGLVGSGVAGGVGLVGTGLGAVGSGLSKAGKFMGRTITGGHSSARRSGATTPVNNAQENGSGAKPL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00921 514 Gene3D C2 domain 259 417 IPR035892 -
Accr6g00921 514 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 435 IPR045050 GO:0008289
Accr6g00921 514 MobiDBLite consensus disorder prediction 488 514 - -
Accr6g00921 514 CDD SMP_SYT 59 248 - -
Accr6g00921 514 MobiDBLite consensus disorder prediction 485 514 - -
Accr6g00921 514 FunFam synaptotagmin-4 isoform X1 259 417 - -
Accr6g00921 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 391 IPR035892 -
Accr6g00921 514 SMART C2_3c 265 362 IPR000008 -
Accr6g00921 514 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Accr6g00921 514 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Accr6g00921 514 Coils Coil 391 418 - -
Accr6g00921 514 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Accr6g00921 514 PRINTS C2 domain signature 306 319 IPR000008 -
Accr6g00921 514 PRINTS C2 domain signature 328 336 IPR000008 -
Accr6g00921 514 PRINTS C2 domain signature 281 293 IPR000008 -
Accr6g00921 514 Pfam C2 domain 264 360 IPR000008 -
Accr6g00921 514 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00921 Accr-Chr6 20259795 20276735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00921 249 350 Lipid Metabolism Gene Families AT3G61300 31.068 9.08e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00921 - - qsa:O6P43_017511 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00921 6 20259795 20276735 Accr6g00921 6 20259795 20276735 ECH