Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00832 ATGGCTACAGAGAGTCTCATGAGAATGGCAGAAGGAAGCCAAACTAGTAAATGGATTTCCTCAAAGGATATTTCAGCATTTGGATCTTTCTGGAAAAATAAGTCAACAGAGGAGCTGGATATTTTCTTGAAGGGACAAAAGTTCAGTCGAGGACAAGCAAACAGTTTTCCAAGTCGAAGTGGTAGTGCTCCACCAAGTATGGAGGGCTCAGTTGCTGCAGTTGAAAATATGTTACCTGTGAAGGATTCTAGTCTGGTTTCAAATTCAGGAAGTTTGAGCAATGCTCTTGAGGATCACAAGTCTGAAGGAGAGCTATTTGATCCTTCTAATGTTGCTTGCCGTTCCTTGGAGCTTCTTTCACAGCCCTTGCAAAATCAACTTAGCAATCATGAAAAAAATCAAGACATCAATGGTTCACCAAAGCAAGCTTCAGAAAGCTTGTTCAATCCCAGTAACATGCCTAAACCTGGGAAAAATGCAATCCCATCAGCAAGTGTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTATTTAACCAATCTCATTTATCGAGTAATGCTACAACTGAAGATTCAGTTGATGTTGATGTGCAAGCAATTGCTTCAAGTGTTTCATCAATAGATTTATCAAACCAGTCCGATTCAGCTACATGTTCTGCTAGTGCTGTGGAGACAGGTATCCTGAACACCGATACTTGTGAACTAACATCAAATGAAGTTTCTCTGTTAAACTTCCGAAGTTCCCAGCATGCTGATGAAACCCAAAACCTGCATGTCGATCCAAGTCCAACACGCAACAAAGATGCTGTGCTGAAGGAATATGTATCAACTGATGGGGCTGTTAATGTGGAAAAGCATAAATTAACAGCCTCTGATGTTAGAAGGAAAAAACAAGAACCGCAACAATCTCATGGTAGGAATAAGCTAAATCAATATTTTACTTCTGGCCATGCCCATCAATTTCCAGTTGTGAGGTCGGAATTTCCTCAAGGCATAAACAATTCACAAAGTTACTTTGGAATGCTTGGTTATAGTAATTCACAATTTTCACCTCTTGGTATACAATCATCATTGCCTTCTACTGGACTTACTGCTCCTTACTATGCAGCTCCAACTGCATTTATGACTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCAGGTTTTCTCCCTACACAGTATAGTTTAGGTGGGTATGCTTTAGGTTCTACCTCTGTGGCACCATATATAGCTGGATATTCTTCTCAAGGTGACCTTCCTCTTCCATCTGAAGCTGCTGGAAGCCCTGACCTAAATGGTCAAGCTACCAATGCTTCTTCAGGAGGTGTTCCACTTGCTTCTGATTTTCAAAGGCGCAGCAAGATTCATGGGCAATATGGATTACCAGTACAACCTTCATATGTTAATCCAATTAATGTGCAATATTATTCCCATGCTTCCAGTGATGTGTATCCTGCTGCTTTTCAGCAGAATCATTTGTCATCGAGAACACTGACTGGAGGACTTTCTTGTCCTTTACCGTCCCAGCAAGATGCGGCTGTTCCTTCCTATTTAAATGGTCATAAATTTCGATCTTCAGCACATGATAGCTTGCCCATTCCAAGTACAACAAATATGGGGATCTCTGGAAGTAGCTATTATGGGAACTCCAATACGGGGGTGATGATGCAATTTCCTCCTTTGTCTCGTGGTGGTCCAATTTGTCCATCCTCTCAAGATGGACAAAATGAGAATATGCCTTGTGTTTCTGTCAGAAATGCAGGATTTTCACCTGGACAGAGAGGAATTAGGGGTTTTGGTGAAACCAAGCAGCACTCTTTTCTAGAGGAACTTAAATCCATCAATCCTGAGAATTTCAAGCTCTCTGATATAGCAGGGCGTATTGTTGAATTCAGCATTGACCAACATGGAAGTCGATTTATCCAGCAGAAGCTTGAAAACTGCAGTGCTGAAGCTAAGGCATCTGTTTTTGAAGAAATCCTTCCATATTCCTCAAAATTAATGACAGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAGCGTTGATCAGAGAAAAACCCTTGCAGATAAACTTTCTGGACAGATTTTATCATTAAGTTTGCAGATGTATGGCTGTCGTGTTATCCAAAAGGCCCTTGATGTTGTTGAATTAGATCAGAAGACACTGTTAATGCAAGGGCTTGATGGACATGTCATGAGATGTGTACACGACCAAAATGGGAATCATGTCATACAAAAATGTATAGAATGTATTCCTGTGGACAAAATCAACTTTATCATATCTGCATTTCGAGGACAAGTTCAGGCTCTTTCTACTCACCCATATGGGTGTCGTGTTATTCAGAGAATTTTGGAGTATTGTTCAGATGAGCAATCCATTCAATTCATAGTGGACGAAATTCTGGAATCTACTTTTGTCCTCACTCAAGATCAGTACGGCAATTATGTAACTCAGCAAGTCCTGAAAAGGGGGAAAAATGAAAGAGGTCAAATTGTAAGCAAGTTAGCTGGCAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGCGACTGAACGAGAGGCCTTGATTTCAGAAATAATTGGGCAGCCTGGTGAAGGCCATAACTTATTGACAATGATGAAGGATCAGTACGCAAATTATGTGATCCAGAAACTTCTTGATATAAGCAGTGACAGCCATCGGGAAATACTTCTCAATCAGATAAGAGATCATATAGATGCTTTGAAGAAATACACGTATGGAAAACACATTGTTGCCCGTTATGAGCAACTTGTTTGTCCAGCTAGCGAGGCTTAG 2874 0.4057 MATESLMRMAEGSQTSKWISSKDISAFGSFWKNKSTEELDIFLKGQKFSRGQANSFPSRSGSAPPSMEGSVAAVENMLPVKDSSLVSNSGSLSNALEDHKSEGELFDPSNVACRSLELLSQPLQNQLSNHEKNQDINGSPKQASESLFNPSNMPKPGKNAIPSASVHKSLVDLIQEDFPRTPSPVFNQSHLSSNATTEDSVDVDVQAIASSVSSIDLSNQSDSATCSASAVETGILNTDTCELTSNEVSLLNFRSSQHADETQNLHVDPSPTRNKDAVLKEYVSTDGAVNVEKHKLTASDVRRKKQEPQQSHGRNKLNQYFTSGHAHQFPVVRSEFPQGINNSQSYFGMLGYSNSQFSPLGIQSSLPSTGLTAPYYAAPTAFMTSGNPFYPNFQPSGFLPTQYSLGGYALGSTSVAPYIAGYSSQGDLPLPSEAAGSPDLNGQATNASSGGVPLASDFQRRSKIHGQYGLPVQPSYVNPINVQYYSHASSDVYPAAFQQNHLSSRTLTGGLSCPLPSQQDAAVPSYLNGHKFRSSAHDSLPIPSTTNMGISGSSYYGNSNTGVMMQFPPLSRGGPICPSSQDGQNENMPCVSVRNAGFSPGQRGIRGFGETKQHSFLEELKSINPENFKLSDIAGRIVEFSIDQHGSRFIQQKLENCSAEAKASVFEEILPYSSKLMTDVFGNYVIQKFFEHGSVDQRKTLADKLSGQILSLSLQMYGCRVIQKALDVVELDQKTLLMQGLDGHVMRCVHDQNGNHVIQKCIECIPVDKINFIISAFRGQVQALSTHPYGCRVIQRILEYCSDEQSIQFIVDEILESTFVLTQDQYGNYVTQQVLKRGKNERGQIVSKLAGKIVQLSQHKYASNVVEKCLEHGDATEREALISEIIGQPGEGHNLLTMMKDQYANYVIQKLLDISSDSHREILLNQIRDHIDALKKYTYGKHIVARYEQLVCPASEA 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 776 812 IPR001313 GO:0003723
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 704 739 IPR001313 GO:0003723
Accr6g00832 957 SUPERFAMILY ARM repeat 620 947 IPR016024 -
Accr6g00832 957 MobiDBLite consensus disorder prediction 128 158 - -
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 632 667 IPR001313 GO:0003723
Accr6g00832 957 MobiDBLite consensus disorder prediction 128 161 - -
Accr6g00832 957 MobiDBLite consensus disorder prediction 430 450 - -
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 884 925 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 668 703 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 813 847 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 776 812 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 632 667 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 704 739 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 890 925 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 848 883 IPR001313 GO:0003723
Accr6g00832 957 SMART pum_5 740 775 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 636 670 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 780 815 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 675 705 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 894 927 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 708 739 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 821 847 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 853 886 IPR001313 GO:0003723
Accr6g00832 957 Pfam Pumilio-family RNA binding repeat 751 774 IPR001313 GO:0003723
Accr6g00832 957 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 333 949 - -
Accr6g00832 957 CDD Pumilio 627 946 IPR033712 GO:0003723
Accr6g00832 957 FunFam Pumilio homolog 1 isoform 2 611 956 - -
Accr6g00832 957 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 612 951 IPR033133 GO:0003723
Accr6g00832 957 Gene3D - 611 953 IPR011989 -
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 740 775 IPR001313 GO:0003723
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 668 703 IPR001313 GO:0003723
Accr6g00832 957 ProSiteProfiles Pumilio RNA-binding repeat profile. 848 883 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00832 Accr-Chr6 16682039 16689494 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00832 K17943 - qsu:112034336 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00832 6 16682039 16689494 Accr6g00832 6 16682039 16689494 ECH