Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00580 ATGGACAGAGAATCGTCAGCCTCTTCTTCTTCTTCTTCTTCATCAACAAGGGCAATTACCAGCAACAATCTCCCACCTCCCGAAGATGCTTGGCTTGATGCCTGCTACAAGTTGCTGCCTCGTTGGGAATCTCATTCCCTTTCTCATCAGTCAATAATTCCCATTTCTATATCAAGAGTTAACCAAGTTGATGCTGCTAGACTGGATGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTCCAGTACGAAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGATTCTCAATTTGGGTTGATAAGCCAACCCCAGGCATTGCTCTGATGAACCTGAGGTATAGAGATGAGCGTGCAATTGAACCAAGAGAAAAAGTCAGAACGGGTCTTGAGGGTCCTGGACTCACTGTTGCTCAGAAGATTTGGTATTGTATTGCAACCGTTGGTGGTCAGTATATCTGGGCCCGCATACAATCCTTTTCTGCTTTTCGACGGTGGGGAGACTCTGATCAGAGATCATTGGCACGCCGGATATGGATCCTTATACAACGTGTAGAAGGAATTTATAGAGCTGCTTCATTTGGCAACTTGTTGATATTTCTTTATACTGGAAGATATAGAAATCTCATTGAAAGAGCTTTACGAGCTAGGCTTGTCTATGGGAGCCCGAATATGAATCGGGCTGTTAGCTTTGAGTATATGAACCGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTACTGTTGCTTCTTCCTCTTCTTAATTCATCGTCCATGAGAAATCTCCTTCGACCATTTTCCAAGGATAAATCATCAAGTTCAGAGCAGGATGACAACATCTGCCCCATATGTCGATCTACTCCAACCATTCCTTATGTTGCTCTCCCTTGTCAGCACAGATATTGTTACTACTGTCTTCGAACACGCTGTGCTGCTGCTCCATCATTTAGATGTTCCAGGTGTAGTGAGCCTGTCGCCGCTATGCAGCGGCATAGTGGTGGTGCCACCAATGGATGA 1059 0.441 MDRESSASSSSSSSSTRAITSNNLPPPEDAWLDACYKLLPRWESHSLSHQSIIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAIEPREKVRTGLEGPGLTVAQKIWYCIATVGGQYIWARIQSFSAFRRWGDSDQRSLARRIWILIQRVEGIYRAASFGNLLIFLYTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSMRNLLRPFSKDKSSSSEQDDNICPICRSTPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVAAMQRHSGGATNG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00580 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Accr6g00580 352 Pfam Zinc finger, C3HC4 type (RING finger) 295 335 IPR018957 GO:0046872
Accr6g00580 352 Pfam Pex2 / Pex12 amino terminal region 69 273 IPR006845 -
Accr6g00580 352 CDD RING-HC_PEX2 295 339 IPR045859 -
Accr6g00580 352 MobiDBLite consensus disorder prediction 1 22 - -
Accr6g00580 352 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Accr6g00580 352 PANTHER PEROXISOME BIOGENESIS FACTOR 2 20 349 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Accr6g00580 352 SMART ring_2 295 335 IPR001841 -
Accr6g00580 352 SUPERFAMILY RING/U-box 288 340 - -
Accr6g00580 352 ProSitePatterns Zinc finger RING-type signature. 311 320 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00580 Accr-Chr6 11545549 11549303 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00580 K06664 - cave:132188569 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00580 6 11545549 11549303 Accr6g00580 6 11545549 11549303 ECH