LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00506	ATGTTGCTTCCAGCCACAGGAGTAGGTATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAGCTCAGAGGCATCATTTGGTTGTGAGAGAGATAGGTGAAGAGATTGATTTAGAAATCGGACCTGGGGATGATGATCCTTCTTTCGGTAATGCAACTTTAATTGGTGCTTCTCCAAGAGAATCTTCTGCTGAAGAGCATGGTGAGAGCAAGCAAATGGGGATGGGTACTCAGCTTCCTAATGATGATCAGGATATGTCAAAGACACAGCCTGTGAAAAGAAAGAAGAAGGTTGTTAAAAGATGGAGGGAGGAGTGGGCAGACACTTACAAATGGGCCTATGTTGATGTAAAAGATGGGACAGCAAGGATTTTCTGCTCTGTCTGCAGGGAGTATGGAAGAAAGCATAGAAGAAATCCATATGGTAATGAGGGCAGTAGGAATATGCAAATGAGTGCCTTAGAAGAACACAATAATAGCTTGCTTCACAAAGAAGCTCTTCGTCTCCAAATGGCCTCCAAGGATAAAATTATTGTTGACAAGCCCATTTATGTCAAAGCGGGATCAATTGTTGAAGCTGTATTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGTCAGTCCAGGAAGCGGTTCATGCTCTTGAAAGAGTAATAGCCAAAAATTCACATTATGTCAACATCATGGAGCGCTTGTTGGAACCAGAACGCATGATTGTTTTCAGAGTTCCATGGGTTGATGATAGGGGTGAGACACATGTTAACCGTGGTTTTCGGGTACATTATAATCAGTCACTGGGTCCATGCAGGGGTGGTATTCGTTTTCATCCGTCAATGAATTTAAGCATTGCTAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCTTACAAATTAGGGGGGGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAGAGCGATAATGAGGTTATGCGATTCTGCCAAAGCTATATGAACGAGATGTATCGCTACTTTGGTCCTGACAAGGACCTTCCATCAGAGGAGATGGGTGTTGGTACTCGAGAAATGGGATATCTCTTTGGACAGTATAGACGGCTAGCTGGTCATTTTCAGGGAAGTTTCACAGGGCCAAGGATATTTTGGTCTGGTTCTAGCCTTCGAACTGAAGCTACTGGCTATGGCCTGGTTTTCTTTGCTCAGCTTGTACTCGCAGACATGAATAAAGAACTCAAAGGACTAAGATGCGTCATAACTGGTTCTGGAAAGATTGCATTGCATGTTTTAGAGAAGTTGATTGCTTATGGTGCACTTCCTATTACAGTTTCAGATTCAAGAGGATATTTGGTTGACGAGGATGGCTTTGATTACATGAAAGTATCTTTCTTGAGAGATATTAAAGCTCAACAAAGGAGTCTGAGAGACTATTCAAAGACATATGCTCGATCCAAATATTATGATGAAGCAAAACCCTGGAATGAAAGGTGTGATATTGCATTTGCTTGTGCTTCCCAGAATGAAATTGGTCAGTCTGATGCAATCAATTTGGTTAACTCAGGATGTCGTATGCTAGTAGAAGGTTCAAGCATGCCCTGTACACCTGAGGCAGTTGATGTTTTGAGGAAAGCTAATGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCAGGAGGGGTTGTAGCTGGAGAACTTGAATTAAATCATCAATGCAATTTGATGCACTGGTCACCAGAGGATTTTGAATCGAAATTGCAGGAAGCAATGAAACAGACTTATCAGAGAGCTATCAAAGCAGCATCTGACTTTGGTTATCAAAAAGAAAGTCCCGAGGCTTTGGTACATGGAGCTGTCATATCTGCATTTCTGACCGTTGCTCAAGCTATGACTGATCAAGGTTGTGTATAA	1896	0.4198	MLLPATGVGMNSAMDDMNLIQQAQRHHLVVREIGEEIDLEIGPGDDDPSFGNATLIGASPRESSAEEHGESKQMGMGTQLPNDDQDMSKTQPVKRKKKVVKRWREEWADTYKWAYVDVKDGTARIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIIVDKPIYVKAGSIVEAVLKRDPHEVEFIQSVQEAVHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVHYNQSLGPCRGGIRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEVMRFCQSYMNEMYRYFGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLVLADMNKELKGLRCVITGSGKIALHVLEKLIAYGALPITVSDSRGYLVDEDGFDYMKVSFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDIAFACASQNEIGQSDAINLVNSGCRMLVEGSSMPCTPEAVDVLRKANVLIAPAMAAGAGGVVAGELELNHQCNLMHWSPEDFESKLQEAMKQTYQRAIKAASDFGYQKESPEALVHGAVISAFLTVAQAMTDQGCV	631

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00506	631	Pfam	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	236	363	IPR006097	GO:0006520\|GO:0016491
	Accr6g00506	631	FunFam	NADP-specific glutamate dehydrogenase	561	631	-	-
	Accr6g00506	631	MobiDBLite	consensus disorder prediction	59	96	-	-
	Accr6g00506	631	Pfam	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	382	629	IPR006096	GO:0006520\|GO:0016491
	Accr6g00506	631	PANTHER	NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED	142	631	-	-
	Accr6g00506	631	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	190	375	IPR046346	-
	Accr6g00506	631	Gene3D	Glutamate Dehydrogenase, chain A, domain 3	559	631	-	-
	Accr6g00506	631	Gene3D	Glutamate Dehydrogenase, chain A, domain 3	190	233	-	-
	Accr6g00506	631	FunFam	Glutamate dehydrogenase	234	369	-	-
	Accr6g00506	631	FunFam	Glutamate dehydrogenase	388	553	-	-
	Accr6g00506	631	SMART	ELFV_dehydrog_3	383	629	IPR006096	GO:0006520\|GO:0016491
	Accr6g00506	631	FunFam	NADP-specific glutamate dehydrogenase	190	233	-	-
	Accr6g00506	631	Gene3D	Leucine Dehydrogenase, chain A, domain 1	234	369	-	-
	Accr6g00506	631	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	293	307	IPR006095	GO:0006520\|GO:0016491
	Accr6g00506	631	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	372	394	IPR006095	GO:0006520\|GO:0016491
	Accr6g00506	631	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	551	562	IPR006095	GO:0006520\|GO:0016491
	Accr6g00506	631	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	414	434	IPR006095	GO:0006520\|GO:0016491
	Accr6g00506	631	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	382	629	IPR036291	-
	Accr6g00506	631	Gene3D	-	388	553	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00506	Accr-Chr6	10066487	10074332	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00506	229	501	EF-hand Containing Proteins	AT5G07440	29.670	3.51e-30	119

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00506	K00262		-	pvy:116115792	1157.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr6g00506	6	10066487	10074332	Accr6g00506	6	10066487	10074332	ECH