Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00470 ATGTATCGAGTAGCTTCCAAACTAGCTTCCTCCATCAGCTCCTCCTCTTCCAAAAAACTTGTATATAATCGGATAATATCCAACAGAAATTATGTGGCGAAGGATATCAACTTCGGAATTGGAGCTCGCGCTGCTATGCTTCAAGGAGTTTCTGAGGTTGCAGCAGCTGTAAAAGTAACAATGGGACCTAAGGGTCGCAATGTAATCATTGAGAAAAGTCATGGAAAACTCAAGATTACAAAAGACGGAGTGACTGTTGCCAGAAGTGTTGAATTTGAAGACAAGGCCAAAAATCTTGGTGCTGAGCTTGTGAAGCAGGTGGCTAAGGCTACCAATACCGCAGCTGGCGATGGTACAACTTGTGCAGCTGTTCTTACTCAGGCTATACTCATAGAAGGTTGCAAAGCTATTGCTTCTGGTGTAAATGTTATGGATTTGAGAAATGGTATAAATAAGGCCGTTGATGCTGTAATTACTGATTTGAAAGCCAGAGCATTAATGATTAGCACACAAGAAGAGATAACCCAGGTTGGAACTATATCTGCTAATGGAGAGCGTGATATTGGAGAACTTATTGCAAGAGCAATGGAGAAAGTTGGAAAGGAGGGAGTCATTACTGTTGCTGATGGGAACACTTTTTATAATGAGTTGGAAGTGGTAGAAGGAATGAAGCTGACCAGAGGCTATATATCTCCTTATTTTATTACTGATCAAATGACCCAGAAATGTGAATTGGAGCATCCCCTTGTACTAATCCATGAGAAGAAAATATCAGACATGAGTTCACTTGTGAAAGCATTGGAGCTAGCAATGGAGAAACATAGGCCACTTCTTGTTGTTGCGGAGGATGTTGAGAGTGATGCTTTGGCTATGCTCATACTCAACAAACATCGTGCTGGGCTTAAGGTTTGTGCTGTAAAAGCTCCAGGTTTTGGTGAAAATAGAAAAGCTGGTTTAGATGATCTAGCCATTCTTACAGGAGGAGAGGTCATCACAGAAGAACGAGGTTTGACCCTTGATAAAGTTCGTCCAGAAATGCTTGGTTCTGCCAGAAAGGTTACTGTTTCTCTTGATGATACTATTATTCTACATGGTGGTGGGGATAAGAAGCTTATTGAAGATAGATGTGAGCAGCTTAGGGCAGTAATTGAAGAGAGCACTGCCACATTTGATAAAGAGAAAGCACAGGAACGGCTGTCAAAGCTGTCTGGTGGTGTAGCTGTTTTCAAGGTTGGAGGGTCTAGCGAAGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACCGATGCTTTAAATGCTACAAGAGCAGCCGTGGAGGAGGGAATTGTGCCAGGTGGTGGAGTTGCTCTGTTATATGCTAGTAAAATATTGGACAACCTCCAAACTCAAAATGAGGATGAGAAAAGAGGAGTAGAGATAATTAAGAGCGCACTTAAGGCACCTGCATTCACAATAGCTGCTAATGCTGGTTTTGATGGTGCTTTAGTCACTGGGAAATTGTTGGAACAAGACGACGATAAGTTTGGTTTTGATGCCGCCAAAGGTGCTTATGTTGACATGGTGGAGTCTGGAATTATAGATCCTCTTAAAGTTGTCAGAACAGCATTGGTTGATGCTGCCAGTGTGTCATTGCTGCTGACTACGACTGAGGCTTCTGTGGTGGATGCTCCGACTAGTAAAGCTCCAAAACGTGTGGCAAATATGGATGAGTTGGACATATAA 1719 0.4258 MYRVASKLASSISSSSSKKLVYNRIISNRNYVAKDINFGIGARAAMLQGVSEVAAAVKVTMGPKGRNVIIEKSHGKLKITKDGVTVARSVEFEDKAKNLGAELVKQVAKATNTAAGDGTTCAAVLTQAILIEGCKAIASGVNVMDLRNGINKAVDAVITDLKARALMISTQEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTFYNELEVVEGMKLTRGYISPYFITDQMTQKCELEHPLVLIHEKKISDMSSLVKALELAMEKHRPLLVVAEDVESDALAMLILNKHRAGLKVCAVKAPGFGENRKAGLDDLAILTGGEVITEERGLTLDKVRPEMLGSARKVTVSLDDTIILHGGGDKKLIEDRCEQLRAVIEESTATFDKEKAQERLSKLSGGVAVFKVGGSSEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYASKILDNLQTQNEDEKRGVEIIKSALKAPAFTIAANAGFDGALVTGKLLEQDDDKFGFDAAKGAYVDMVESGIIDPLKVVRTALVDAASVSLLLTTTEASVVDAPTSKAPKRVANMDELDI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00470 572 FunFam 60 kDa chaperonin 222 403 - -
Accr6g00470 572 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 Pfam TCP-1/cpn60 chaperonin family 53 552 IPR002423 GO:0005524
Accr6g00470 572 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Accr6g00470 572 NCBIfam chaperonin GroEL 33 556 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 SUPERFAMILY GroEL-intermediate domain like 168 233 IPR027410 -
Accr6g00470 572 Gene3D GroEL 222 403 IPR027409 -
Accr6g00470 572 Gene3D - 167 440 IPR027410 -
Accr6g00470 572 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 30 562 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 Hamap Chaperonin GroEL [groEL]. 32 567 IPR001844 GO:0042026|GO:0140662
Accr6g00470 572 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Accr6g00470 572 Gene3D - 36 553 IPR027413 -
Accr6g00470 572 SUPERFAMILY GroEL equatorial domain-like 37 550 IPR027413 -
Accr6g00470 572 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00470 Accr-Chr6 9514930 9520012 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00470 K04077 - gmx:100778935 900.968