Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00298 ATGGCCCTGGCAAAAGAAATCATGGGCTCTTCTTTGATGGAGAGATCTTCATTTGCTTCATCATCAAAATTGCTCCTTGGCCATAGTTTTCAGCAGAACAAGTTCTTGGTGAGCCCTTTTGCAGTTCCTTTGGAGAAGAATAGAAGACAAGTGAGGTTGAGAAAAGCTTTGAACAACAATACCGTGGCGGCTATCAGTGAGGATTTGGTCAAGTCCTCTTCTTCTTCATCATCATCTTCTACTTCTGTTCCTGCTGAGAAAGCAGTGACATTTAAGGTTAGAGCTGTAGTGACTGTTAGGAACAAGATCAAAGAGGATTTCAAGGAGACCCTTGTGAAGCATTTGGATGCAATCACTGACAGAATAGGCAGGAATGTTGTTTTGGAGCTTGTCAGCACTGAGATTGACCCAAAGACGAAAGCCCCAAAGAAGAGCAATGAAGCTGTGCTAAAAGACTGGTCAAAGAAAATGAATGTGAAAGCAGAGAGAGTTAATTACACAGCAGAGTTCATGGTGGACTCAGATTTTGGGGAACCAGGAGCCATTACAGTGACCAACAAACACCAACAAGAGTTCTTCATGGAAAGCATAACCATAGAAGGATTTGCTTGTGGCCCTGTTCATTTCCCCTGTCACTCCTGGGTTCAAGCCAAGAAAGATCTTCCTGGAAAGAGGATATTCTTTTCCAACAAGCCATATCTACCCCATGAGACACCAGCTGGGCTAAAAGTGCTGAGAGAGAAAGAACTGAGGAATCTAAGAGGTGACGGCGTAGGTGTTAGGAAACTATCAGACAGAATATATGACTTTGCCACCTACAATGATTTGGGCAATCCTGATAAAGGCACAGATCTCTCTAGACCAGCTCTCGGAGGCTCAGAAAAATACCCTTACCCGAGACGCTGTCGTACCGGCCGCCTCCCCTCCGACACCGATATGTACACGGAGAGCCGTGTGGAGAAGCCATTGCCGATGTATGTTCCGAGAGATGAGAGATTTGAGGAGTCAAAGAAGAACACATTCACAATCAAGAGGTTGAAGGCAGTGCTTCATAACTTGATCCCAGGGCTGAAGGCCAGCCTCTCTGTCAATAACAATGACTTCAATGAATTCTCTGACGTTGATGGATTGTACAGTGAAGGTCTTCTCATCAAATTGGGTTTGCAAGATGAAGTTCTCAACAAAGTCCCTTTGATCCGCAAGATCCATGAATCTAGTCAGGGCCTTCTTAAGTTTGACACTCCCAAGATCATTTCCAAGGACAAGTTTGCGTGGCTGCGAGATGACGAATTTGCCCGTCAAGCAATGTCAGGAATCAACCCTGTCAATATTGAGAAGCTCAAGGTTTTCCCACCTGTGAGCAACCTTGACCCTCAAATTTATGGCCCTCAAGAGTCTGCCCTAAGAGAAGAACACATTCTGGGTCAACTTAATGGCATGACTGTTCAACAGGCAATAGATGAAGATAAGCTGTTCATTATAGACTACCATGACATCTATCTTCCGTTTCTTGATGGGATCAATGCTCTTGATGGTAGAAAATCCTACGCTACCCGCACCATATTCTTCTTGACGCCCGTGGGCACTCTCAAGCCTGTAGCCATAGAGCTCAGTCTGCCACCGGCCGGACCAAGTTCCCGGTCAAAACGTGTGGTCACGCCCCCAGTGGACGCCACCACCAACTGGATGTGGCAGCTTGCTAAGGCCCACGTCTGTTCCAATGACGCCGGCGTGCATCAACTTGTTAACCATTGGTTACGGACACACGCGTGCATGGAGCCGTTTATATTGGCTGCATACAGGCAATTAAGTGCAATGCACCCAATTTTGAAGCTATTGGATCCTCACATGAGGTACACACTAGAGATCAATGCCTTGGCTCGCCAAAGTCTGATCAATGCTGATGGAATCATTGAGTCTTGCTTCACTCCTGGACGCTACTGCATGGAAATCAGTTCTGCTGCTTACAAAAACTTGTGGCGCTTCGACATGGAGAGCCTCCCTGCCGATCTCGTCCGCAGGGGAATGGCGGTTCCTGATCCGACTCAGCCTCATGGTCTGAGGCTGCTCATAGAAGACTACCCTTATGCTGCCGATGGACTCATGATCTGGTCCGCCATACAGAACTGGGTTCGCACCTATGTGAATCATTACTACCCTGACCCTAACCTTGTGGCTCAAGACAAGGAGCTTCAAGCTTGGTACTTCGAATCCATCAATGTAGGCCATGCTGACCTCAAACATGAACCTTGGTGGCCACCATTGAACACAAGTGACGACCTCGTCTCCGTCCTCACAACCTTGATTTGGAACGCTTCTGCACAGCATGCTGCCCTTAATTTCGGACAGTACCCTTATGGAGGGTACGTGCCCAATCGCCCTCCGCTGATGAGAAGACTAATCCCGGACGAGAGTGACCCTGAATATGCAAGTTTCCAAGCAGACCCTCAGAGATACTTCCTCAATGCTATGCCTAGCTTGTTGCAAGCTACAAAATTTATGGCCGTAGTTGATACTCTGTCCACTCATTCGCCGGACGAGGAGTACCTCGGGGAGCGGCAGCAACCGTCGACCTGGACTGGGGACACCGAGATGGTGGAGGCCTTCTACGGGTTCTCGGCCAAGATCATGCAGATAGAGAAGGAGATTGACAAGAGGAACTGTGACAGGACACTGAGGAACCGATGTGGTGCTGGAGTGTTGCCTTATGAGCTGCTTGCTCCTTCATCTGAACCCGGCGTCACATGTAGAGGTGTTCCAAACAGTGTGTCCACCTGA 2778 0.4813 MALAKEIMGSSLMERSSFASSSKLLLGHSFQQNKFLVSPFAVPLEKNRRQVRLRKALNNNTVAAISEDLVKSSSSSSSSSTSVPAEKAVTFKVRAVVTVRNKIKEDFKETLVKHLDAITDRIGRNVVLELVSTEIDPKTKAPKKSNEAVLKDWSKKMNVKAERVNYTAEFMVDSDFGEPGAITVTNKHQQEFFMESITIEGFACGPVHFPCHSWVQAKKDLPGKRIFFSNKPYLPHETPAGLKVLREKELRNLRGDGVGVRKLSDRIYDFATYNDLGNPDKGTDLSRPALGGSEKYPYPRRCRTGRLPSDTDMYTESRVEKPLPMYVPRDERFEESKKNTFTIKRLKAVLHNLIPGLKASLSVNNNDFNEFSDVDGLYSEGLLIKLGLQDEVLNKVPLIRKIHESSQGLLKFDTPKIISKDKFAWLRDDEFARQAMSGINPVNIEKLKVFPPVSNLDPQIYGPQESALREEHILGQLNGMTVQQAIDEDKLFIIDYHDIYLPFLDGINALDGRKSYATRTIFFLTPVGTLKPVAIELSLPPAGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAYRQLSAMHPILKLLDPHMRYTLEINALARQSLINADGIIESCFTPGRYCMEISSAAYKNLWRFDMESLPADLVRRGMAVPDPTQPHGLRLLIEDYPYAADGLMIWSAIQNWVRTYVNHYYPDPNLVAQDKELQAWYFESINVGHADLKHEPWWPPLNTSDDLVSVLTTLIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFQADPQRYFLNAMPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSTWTGDTEMVEAFYGFSAKIMQIEKEIDKRNCDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00298 925 FunFam Lipoxygenase 558 924 - -
Accr6g00298 925 FunFam Lipoxygenase 234 336 - -
Accr6g00298 925 CDD PLAT_LH2 91 230 IPR042057 -
Accr6g00298 925 ProSitePatterns Lipoxygenases iron-binding region signature 1. 579 593 IPR020833 GO:0016702|GO:0046872
Accr6g00298 925 PANTHER LIPOXYGENASE 92 924 IPR000907 GO:0016702|GO:0034440|GO:0046872
Accr6g00298 925 ProSiteProfiles PLAT domain profile. 107 229 IPR001024 GO:0005515
Accr6g00298 925 SUPERFAMILY Lipoxigenase 234 924 IPR036226 -
Accr6g00298 925 Gene3D - 337 422 IPR027433 -
Accr6g00298 925 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 232 925 IPR013819 GO:0016702|GO:0046872
Accr6g00298 925 Gene3D PLAT/LH2 domain 78 233 - -
Accr6g00298 925 Gene3D - 558 924 - -
Accr6g00298 925 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 91 233 IPR036392 GO:0005515
Accr6g00298 925 SMART LH2_4 91 230 IPR001024 GO:0005515
Accr6g00298 925 Gene3D - 423 556 - -
Accr6g00298 925 FunFam Lipoxygenase 424 556 - -
Accr6g00298 925 Gene3D - 234 336 - -
Accr6g00298 925 PRINTS Lipoxygenase signature 599 619 IPR013819 GO:0016702|GO:0046872
Accr6g00298 925 PRINTS Lipoxygenase signature 561 578 IPR013819 GO:0016702|GO:0046872
Accr6g00298 925 PRINTS Lipoxygenase signature 579 596 IPR013819 GO:0016702|GO:0046872
Accr6g00298 925 Pfam Lipoxygenase 241 908 IPR013819 GO:0016702|GO:0046872
Accr6g00298 925 Pfam PLAT/LH2 domain 150 228 IPR001024 GO:0005515
Accr6g00298 925 PRINTS Plant lipoxygenase signature 225 246 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 264 280 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 297 316 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 516 540 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 199 217 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 449 468 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 365 386 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 410 426 IPR001246 GO:0016491
Accr6g00298 925 PRINTS Plant lipoxygenase signature 837 851 IPR001246 GO:0016491
Accr6g00298 925 ProSitePatterns Lipoxygenases iron-binding region signature 2. 606 616 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00298 Accr-Chr6 4557142 4562712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00298 1 924 Acyl Lipid Metabolism Gene Families AT1G17420 72.747 0.0 1416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00298 K00454 - gmx:100793614 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00298 6 4557142 4562712 Accr6g00298 6 4557142 4562712 ECH