Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02789 ATGGCGAAGCCTCCTTCTTTCTTCCTCCTCCTTCTCTGCTCTTCGGGACTCATGCTGCTTCTCATCTTCTCCGATTTCCACTCTACAACCCCACCCGCCGCCGAAATCTTCCTCTCTCGCATTCCCATGATGGCCAAGATCCTCCCCAGAAGAGCTTTAGGTGACACCACTGTCATCACTGTACCTTCCAGCAGCCCTGTCACTGTGTACCCCACCAATCCATCTGCTGTGCCCGTCACTGTACCTTCCTCCAATTCCCCCGTACCCGCTTCCGCTTACCCTCCCCCATCTCCGTCGTCCACCGGTGTTCCGGTCACCAATTCTCAACCACCACCTCCTCAAACGCCAACTAATGCTGCTCCCGCCGTTTCAGGGCAGAAGTGGTGTGTGGCTAAATCTGGAGTTTCACAATCTGTTCTTCAATCGGCACTTGACTACGCTTGTGGAATGGGAGGCGCCGATTGCTCTCAGATACAGCAGGGTGGGAGTTGCTACAATCCCGACAATCTGCAAAATCATGCCTCTTATGCCTTCAACTCCTACTACCAAAAGAACCCCGCTCCTACCAGCTGTGACTTCGGAGGCGCTGCCTCCTTAGTTACCACCAACCCTAGTACGGGTTCTTGCATTTACCCGTCGTCGTCGTCGTCATCCTCATCGTCATCGCCGCCAACAACTCCGACGCCATCGTCCCCAACTACTCCCTCGTCTTCTTCTTCGCCGTCGCCCCCGACATCTGTTGCATCACCGACAAAATCTCCAACTCCGACAACACCGTCATCGCCAGGAGGAGGTACTTTTGGCTTCGGTAACCCGACATCATCATCGTCGGCGCCATTGAATTCGAGCAATCCGACGTCAGGTTATATGCCACTTGTGGGGTCGCAACCCCCACCTTCCACCTCATGGTCAAATTCAAGTGGCCTCAGACCTTTGGTTGCCTCCACGCTTCTGCTGATGTCGCTGGTCGCTGCGAAATTCAACATGCGCACTTAG 996 0.5472 MAKPPSFFLLLLCSSGLMLLLIFSDFHSTTPPAAEIFLSRIPMMAKILPRRALGDTTVITVPSSSPVTVYPTNPSAVPVTVPSSNSPVPASAYPPPSPSSTGVPVTNSQPPPPQTPTNAAPAVSGQKWCVAKSGVSQSVLQSALDYACGMGGADCSQIQQGGSCYNPDNLQNHASYAFNSYYQKNPAPTSCDFGGAASLVTTNPSTGSCIYPSSSSSSSSSSPPTTPTPSSPTTPSSSSSPSPPTSVASPTKSPTPTTPSSPGGGTFGFGNPTSSSSAPLNSSNPTSGYMPLVGSQPPPSTSWSNSSGLRPLVASTLLLMSLVAAKFNMRT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02789 331 PRINTS Proline rich extensin signature 223 248 - -
Accr5g02789 331 PRINTS Proline rich extensin signature 87 99 - -
Accr5g02789 331 PRINTS Proline rich extensin signature 66 82 - -
Accr5g02789 331 PRINTS Proline rich extensin signature 100 121 - -
Accr5g02789 331 MobiDBLite consensus disorder prediction 209 307 - -
Accr5g02789 331 MobiDBLite consensus disorder prediction 79 121 - -
Accr5g02789 331 Gene3D - 122 223 - -
Accr5g02789 331 SMART X8_cls 127 211 IPR012946 -
Accr5g02789 331 MobiDBLite consensus disorder prediction 240 307 - -
Accr5g02789 331 MobiDBLite consensus disorder prediction 209 224 - -
Accr5g02789 331 MobiDBLite consensus disorder prediction 225 239 - -
Accr5g02789 331 FunFam Glucan endo-1,3-beta-glucosidase 4 122 215 - -
Accr5g02789 331 PANTHER BETA-1,3 GLUCANASE 44 227 IPR044788 -
Accr5g02789 331 MobiDBLite consensus disorder prediction 88 118 - -
Accr5g02789 331 Pfam X8 domain 127 198 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02789 Accr-Chr5 53720305 53721583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02789 87 213 Glycoside Hydrolase AT4G26830 45.312 9.03e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02789 - - pcin:129304540 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03414 2 69800001 69802402 Accr5g02789 5 53720305 53721583 CCT
Accr5g02789 5 53720305 53721583 Accr5g02789 5 53720305 53721583 ECH