Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00966 ATGGTTTTATGTGAAATCATTGTGTTTAGACCTGTTCAAAATTTTTATTGTTTACTTGTATCTATCCTTAGATTGTGCTACTTGATGGGGCAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCACCCACTGAACATGCTGTGCATTTGGATCTGATGGGCAAAGTTCATGGATATACTTCTGCTGAAGGCTATTTTAATAGCTTGAAAGAAGAAGATAAAAATAATAAGACATATGGTGCTCTCTTGAATTGCTATACACGGCAGCGCCAAACTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAGGAGTTGGGGCTTGCTTCATCACCTCTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCAGCTTGAGAAGGTCCCTGAAGTGCTAATCGAGATGAAAAAGAACAATGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGCAAGGTCTGATATTGACGGAATTGAAAGAACACTAAAAGAGATGGAAAACCAATCTCACATTGACATGGACTGGAACACTTACGCTGTTGTGGCTGATCTCTATATAAAAGCAGGACTTCAGAGTAAAGCAATTGATGCCCTTAAGAAAGCAGAGGAGCGGCTAGATAAGAAGGATGGCATTGGTTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAGACAAGTCTGAGGTCATCAGATTATGGGAACGGGAGAAGATTGATTGCAAGAGATGCCTAAACAGAGATTTCACCACCATGTTAGAATCTCTGCTAAGGCTTGGTGAGCTGGATGAAGCTGAGAATATCTTCAAGGAATGGGAGTCCTCTGGAAATTGTTATGATCCTCACATCCCGGATGTTGTCATCACTGGATACTCACAAAAAGGTTTGCACGAAAAAGCCGAAAGCATGTTGAAAAGCTTACAAAAGAGGGGGAAGGCGACCGTGTCGAACAGTTGGTCTGAAGTCGCAGGTGCATACCTTCGCAAGGGTGAGATGGAGAAAGCATATGATTGCTTTAAAGCAGCCCTACAGGCGGAAAATGAAGGATGGAAGCCGAATCCTAGGGTGTTCTCGGGCATAGTTAGTTGGCTTGGTGACAACGGAAGTGTTGAAGAAGTAGAAGCTCTGGTGAGCTCTCTGAGAAAACTTGTCCCAGTAAACAGAAGAATGTACAACGCCCTCATCAAGGCTTATGTAAGACATGAAAAAGAAGTAGATGGGCTTTTGGATCGTATGAAGAAAGATAACATTGATGAAGACGAAAATACGAAAGAAATTCTTGATATGAGGAAGCCGTAG 1326 0.4148 MVLCEIIVFRPVQNFYCLLVSILRLCYLMGQVSEWMNKNGVCIFSPTEHAVHLDLMGKVHGYTSAEGYFNSLKEEDKNNKTYGALLNCYTRQRQTEKALSHLQKMKELGLASSPLSYNDIMCLYTNIGQLEKVPEVLIEMKKNNVLPDNFSYRICINAFGARSDIDGIERTLKEMENQSHIDMDWNTYAVVADLYIKAGLQSKAIDALKKAEERLDKKDGIGYNFLISLYARLGDKSEVIRLWEREKIDCKRCLNRDFTTMLESLLRLGELDEAENIFKEWESSGNCYDPHIPDVVITGYSQKGLHEKAESMLKSLQKRGKATVSNSWSEVAGAYLRKGEMEKAYDCFKAALQAENEGWKPNPRVFSGIVSWLGDNGSVEEVEALVSSLRKLVPVNRRMYNALIKAYVRHEKEVDGLLDRMKKDNIDEDENTKEILDMRKP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00966 441 Gene3D Tetratricopeptide repeat domain 248 321 IPR011990 GO:0005515
Accr5g00966 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Accr5g00966 441 NCBIfam pentatricopeptide repeat 81 110 IPR002885 -
Accr5g00966 441 NCBIfam pentatricopeptide repeat 116 148 IPR002885 -
Accr5g00966 441 NCBIfam pentatricopeptide repeat 258 288 IPR002885 -
Accr5g00966 441 ProSiteProfiles TPR repeat profile. 325 358 IPR019734 GO:0005515
Accr5g00966 441 SUPERFAMILY TPR-like 181 397 IPR011990 GO:0005515
Accr5g00966 441 SUPERFAMILY TPR-like 81 360 IPR011990 GO:0005515
Accr5g00966 441 Pfam PPR repeat 399 425 IPR002885 -
Accr5g00966 441 Pfam PPR repeat 258 285 IPR002885 -
Accr5g00966 441 Pfam PPR repeat 81 110 IPR002885 -
Accr5g00966 441 Pfam PPR repeat 295 320 IPR002885 -
Accr5g00966 441 Pfam PPR repeat 223 245 IPR002885 -
Accr5g00966 441 Gene3D Tetratricopeptide repeat domain 31 161 IPR011990 GO:0005515
Accr5g00966 441 Gene3D Tetratricopeptide repeat domain 162 247 IPR011990 GO:0005515
Accr5g00966 441 Gene3D Tetratricopeptide repeat domain 322 437 IPR011990 GO:0005515
Accr5g00966 441 PANTHER OS12G0527900 PROTEIN 31 428 - -
Accr5g00966 441 Pfam PPR repeat family 116 159 IPR002885 -
Accr5g00966 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00966 Accr-Chr5 35115796 35117121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00966 31 424 EF-hand Containing Proteins AT1G02150 32.274 3.03e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00966 - - qsu:111989686 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00966 5 35115796 35117121 Accr5g00966 5 35115796 35117121 ECH