Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01425 ATGCTCCAGCTTCACTCTTGTTCATGTCGCGGTGCTTTCACAGCAAAATCATTTCGTACTTCACCTGCTTTCTTCTCCGCCAGGGGTCGGAATCTTAAGTCTCCTCTCGGTGTTGGGAGAACAATTAGAGGCTGTTGTGGTTTCGACGGAGACTTGTACTCCGATGGTGAGCAAGAGCCGGTCTTGGTTAATAGGACGAACTACGCCGGCGTGCGGTTGGAGGAGACTGTCGATACCGGTTCAGGAAAGCTCAGGCTCGATTCTTGGATCTCTTCCCGCATAAACGGTATAAGTAGGGCTCGAGTGCAATCAAGTATTAGAGCGGGGCTCGTTCATGTCAACGGTCGTGCTGTTCATAAGGTTTCTTTCAATGTCAAGACGGGGGATAAGATCAATTGCACGATTTCAGAGTTACAGCAGTTGAGAGCTGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATTTGCTAGTAATTAATAAACCTGCGCACATGGTTGTGCATCCAGCACCTGGAAATGCTTCTGGTACTCTTGTCAACGGCATTCTTCACCATTGCAACCTTCCTAATGTTGAGATTCCAAACAAGGAAGCTCTTTCTGAGGCTGAAGATTCTGATGACGATTTTGATATTTACTCTATTTGTTCAAGTTCCAGTGAAGGTTTACTACCACATTCCAGCACGTGTGGAGCATCAGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGCGGATTGCTTGTTGTGGCAAAGGATGAACATTCCCATAAACATTTATCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTTTATGTCAGTCTCACTATTGGGGTTCCCTCTCCAACTGCTGGACGTGTCGAGGTTCCAGTTGGTCGTGACCCTAATAATCGGATTCGAATGACTGCTGTAGCTGGATCAATTAATTCTAGAAAAGCTCGTTATGCTGCTAGTAGGTACAAAGTAAGTGAGATACTTGCTAAGGGTGCTTGTGCGTTGCTTGAATGGAAGTTAGAAACCGGGCGTACTCATCAGATACGTGCACACTCTAAGTATCTAGGTGTTCCCCTGCTGGGTGATGAGGTGTATGGAGGGACGAAGAGCATGGCCTTATCACTACTTCAGCCCCGAACACCAACGAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTCAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTTGGGTTTCGGCATCCCCATACAGGAGACCAGTTGCATTTTACATGTCAACCCCCTGCAGACTTTAAAGAGATTTTGAGCCAGCTTCAGACAATTGGCTGTGAGAGGCTATCTTCCTTTTCATGA 1347 0.4662 MLQLHSCSCRGAFTAKSFRTSPAFFSARGRNLKSPLGVGRTIRGCCGFDGDLYSDGEQEPVLVNRTNYAGVRLEETVDTGSGKLRLDSWISSRINGISRARVQSSIRAGLVHVNGRAVHKVSFNVKTGDKINCTISELQQLRAEPEHMELDIVYEDEHLLVINKPAHMVVHPAPGNASGTLVNGILHHCNLPNVEIPNKEALSEAEDSDDDFDIYSICSSSSEGLLPHSSTCGASVRPGIVHRLDKGTSGLLVVAKDEHSHKHLSEQFKLRTIKRVYVSLTIGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSINSRKARYAASRYKVSEILAKGACALLEWKLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMALSLLQPRTPTSLRGKIVQMVSQLDRPCLHALTLGFRHPHTGDQLHFTCQPPADFKEILSQLQTIGCERLSSFS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01425 448 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Accr4g01425 448 SMART s4_6 84 142 IPR002942 GO:0003723
Accr4g01425 448 Gene3D Pseudouridine synthase 151 200 - -
Accr4g01425 448 Gene3D Pseudouridine synthase 215 440 - -
Accr4g01425 448 CDD S4 85 163 - -
Accr4g01425 448 Pfam S4 domain 85 131 IPR002942 GO:0003723
Accr4g01425 448 Pfam RNA pseudouridylate synthase 158 355 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Accr4g01425 448 CDD PseudoU_synth_RluA_like 159 410 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Accr4g01425 448 ProSitePatterns Rlu family of pseudouridine synthase signature. 241 255 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Accr4g01425 448 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Accr4g01425 448 Gene3D - 69 140 IPR036986 GO:0003723
Accr4g01425 448 FunFam RNA pseudouridine synthase 2 chloroplastic 71 139 - -
Accr4g01425 448 SUPERFAMILY Pseudouridine synthase 144 436 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Accr4g01425 448 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 88 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01425 Accr-Chr4 14337062 14340156 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01425 K06180 - gmx:100810383 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01425 4 14337062 14340156 Accr4g01425 4 14337062 14340156 ECH