Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01178 ATGTCTGCGGTCGAATCGGAGAAGAATGTCGAAGAAGAGAAGGGGGTGGTGAGAAGGGGAGAGCTTTTGTTTTGCGGTGGTACGTGTTGGGATATTATTGGTCGTCGTAAAGGTCCAGCTGACGGCAACTTATTCTCTCCAACTCGGCTTCGCCCTCTTGTTGGGATTGATATTCGGTTCGTTGCATCTGGATGCGCATCTTGTCATTGCGTGGCATTAGATGTTGAGGGCCGCTGCTATACTTGGGGCCGCAATGAGAAGGGGCAACTGGGTCATGGAGATAACATTCAGCGTGACAGGCCAACCGTGGTATCTGAACTTTCAAAACATAAAATTGTCAAAGCTGGAGCAGGGAGGAGCCACACGGTGGTTGTTACAGAGGATGGCCACTCCCTTGCCTTTGGATGGAATAAGCATGGACAGCTAGGTTCAGGTTCTGCGAAAAATGAAATTGAATCATCTCCTGTTCGCTGTCTTGTGTCAGAAGTCACTTATGCTACTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCTGTTGAAGGAGCTTCTATACTTACTGCAGGGCTACCACAATATGGGCAGTTAGGACATGGAACAGACAATGAGTATAATTCCAAAGACAGTTCTGTGAGGCTGGTTTATGAAGCCCAACCACGTCCACGGGCAGTTGCTAAGCTATCTGGTGAAACAATTGTCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTCGTTTACACGTGGGGTTTTGGTGGTTACGGAAGGCTAGGGCATAGGGAGCAGAAGGATGAGTGGTCCCCACGTCGTGTGGATGCTTTTCGGGACAGAAATGTTCTGCCTCCTGATGCTGTGATTTCTGCTGGTTCTGTTAACTCTTCATGCACTGCAGGTGGAGGGCAATTGTATATGTGGGGCAAAATAAAGAATACAGGTGATGATTGGATGTATCCTAAGCCTCTGATGGATTTAAGTGGCTGGAACTTACGATGCATGGATTCAGGCAATTTGCACCATTTTGTTGGGGCTGATTCTTCATGTATAAGTTGGGGCCATGCTCAACATGGAGAACTGGGATATGGACCTAATGCACAGAAGTCTTCTGCAGCACCCAAAAAGGTGGACATTCTTGAGGGCATGCATGTTATGGGTGTTGCTTGTGGCATGGGCCATTCCATGGTCATTGTTGATGGAACAAATGTTGGTGAACGACTTCACCAGCTTGATATATACGATGGAAAAGCTTCTGGTGAAGTAAATGAGGAACCTGTAAAGAAAGCTCCCGCGCCCAAGCAGAGTACCAAAAAGGGTGCAAAAGGTGGTGACAACTCCAAGAAGAAGAAACCAAAAGAATCATCTGAATCGGAGGAGGAAGATGATGATGGAGCAAGTGAAGATGAGGAGCAAGAAAATGGTGTGGCGAGGGGGAAAAGGAAACGCGGCGGAAATAATACCGGTAGGGCAAAAGGCAAAGCTAAAGGTTCCGGCGCTGGGAGAAATCGGTCTCCGGTAAAAACAGGCAAGAGAGGAAGACCCCGTAAGTCTTGA 1560 0.4769 MSAVESEKNVEEEKGVVRRGELLFCGGTCWDIIGRRKGPADGNLFSPTRLRPLVGIDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDNIQRDRPTVVSELSKHKIVKAGAGRSHTVVVTEDGHSLAFGWNKHGQLGSGSAKNEIESSPVRCLVSEVTYATCGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAVAKLSGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWSPRRVDAFRDRNVLPPDAVISAGSVNSSCTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNLHHFVGADSSCISWGHAQHGELGYGPNAQKSSAAPKKVDILEGMHVMGVACGMGHSMVIVDGTNVGERLHQLDIYDGKASGEVNEEPVKKAPAPKQSTKKGAKGGDNSKKKKPKESSESEEEDDDGASEDEEQENGVARGKRKRGGNNTGRAKGKAKGSGAGRNRSPVKTGKRGRPRKS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01178 519 PANTHER PROTEIN RCC2 8 501 IPR028641 -
Accr4g01178 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Accr4g01178 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Accr4g01178 519 Gene3D - 210 428 IPR009091 -
Accr4g01178 519 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Accr4g01178 519 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Accr4g01178 519 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Accr4g01178 519 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Accr4g01178 519 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Accr4g01178 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Accr4g01178 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Accr4g01178 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Accr4g01178 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Accr4g01178 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Accr4g01178 519 MobiDBLite consensus disorder prediction 442 458 - -
Accr4g01178 519 Gene3D - 7 209 IPR009091 -
Accr4g01178 519 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Accr4g01178 519 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Accr4g01178 519 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Accr4g01178 519 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Accr4g01178 519 Pfam Regulator of chromosome condensation (RCC1) repeat 247 283 IPR000408 -
Accr4g01178 519 MobiDBLite consensus disorder prediction 420 519 - -
Accr4g01178 519 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
Accr4g01178 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01178 Accr-Chr4 11205076 11211632 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01178 - - gmx:100819842 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01178 4 11205076 11211632 Accr4g01178 4 11205076 11211632 ECH