Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00999 ATGATCTCAATCACTTCCGCTGAGCTTAACTACCTTGTCTTCCGCTACCTTCACGAATCAGGTTTTACGCATTCGGCATTTGCTTTTGGGTATGAGGCAGGGATTGATAAAAGCAGAATCGATGGAAATTTGGTTCCACCAGGAGCTCTTGTAACATTCATACAGAAAGGAATTCAATATATTGAGCTGGAGGCGAACTTGAGTGGTAGTGATGCAGAAACAGATGACGATGTCTCATTTCTACAACCTCTTGACCTTATTACCAAGGATCCTAAAGAACTACATAATATGGTTAAAACCAAAAGGGAAAATCTACGTCAACATAAGTCTGAAGCAAATAAAAAGGTGAATGATTTCAGTCAAGACACTGCGAGTGAACATGCTCAGGAAATGGACAAAGAGGGCGAGGAAAGGGGAAATCAACATGAAATTGATAAAACAAACCTAGAGAAAGAAGTCGAGCAAGAAAAGGGTGAATATAAAGAAATACAGCGTTTGGATCAAAATGATGTGGAGAGGGATGAAGATAAGATTGTTGCTGGAAATATAGAAAATGGAACGTGTGGAGGACCTGAGCCAATGGAGATCTCGCAAAGCTCCATGATTTTGCCTACTGAGGTTCCAACTTGTGATGTAAAAATTTTGGAAGGTCATACCTCTGAGGTTTTTGCTTGTGCATGGAATCCATCAGGCTCGCTTCTTGCGTCTGGATCTGGAGATTCAACAGCCCGGATCTGGAAAATTACAGAAGGACCTATTAACGCTAGCATACAAAATGAACCAATAAATGTTGTGGTGCTAAGGCACTTTAAAGGAAGAACTAGTGAGAATAGCAAGGATGTGACGACACTTGACTGGAATGGGGATGGCACATTACTGGCAACTGGTTCTTATGATGGTCAAGCAAGAATATGGAGTAGAGATGGGGAGCTGAAGAGCACATTAAACAAGCATAAAGGTCCCATCTTTTCTTTGAAATGGAATAAGAAGGGGGATTACCTTCTTAGTGGCAGCGTTGATACAACTGCTATTGTATGGGATATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCGCCAACTCTTGATGTAGATTGGCGAAACAATGTTTCATTTGCAACATGTTCCACTGATAACATGATATATGTGTGCAAAATTGGAGAGAATCGGCCAATCAAAACCTTCTCAGGGCATCAGGGTGAAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGACCATACTGCCAAAATTTGGAGTCTGAAGGAGAACAAGTATTTACATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACTGGCCCTTGTACAAGCAACCCCAATCTGCCATTAGTTCTAGCAAGTGCCTCTTTTGACTCTACAATAAAGGTGTGGGATGTGGATCTAGGAAAAGTGCTCCACAGCTTGAATGGTCATAGGGTTCCTGTATATTCCATTGCATTCAGCCCAAATGGTGAGTATCTGGCGAGTGGCTCCATGGATAGCTGCATGTATATATGGTCTGTGAAGGAGGGGAAAATTGTGAAGACATATACCGGGAATGGTGGGATATTTGACATTAGTTGGAACAAAGATGGCGACAAAGTTTCTGCTTGTTTTTCAAACAATATTGTTTGTGTCTTGGATTTCCGAATGTAA 1704 0.4126 MISITSAELNYLVFRYLHESGFTHSAFAFGYEAGIDKSRIDGNLVPPGALVTFIQKGIQYIELEANLSGSDAETDDDVSFLQPLDLITKDPKELHNMVKTKRENLRQHKSEANKKVNDFSQDTASEHAQEMDKEGEERGNQHEIDKTNLEKEVEQEKGEYKEIQRLDQNDVERDEDKIVAGNIENGTCGGPEPMEISQSSMILPTEVPTCDVKILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKITEGPINASIQNEPINVVVLRHFKGRTSENSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELKSTLNKHKGPIFSLKWNKKGDYLLSGSVDTTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKIWSLKENKYLHDLKEHVKEIYTIRWSPTGPCTSNPNLPLVLASASFDSTIKVWDVDLGKVLHSLNGHRVPVYSIAFSPNGEYLASGSMDSCMYIWSVKEGKIVKTYTGNGGIFDISWNKDGDKVSACFSNNIVCVLDFRM 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00999 567 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 251 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 532 IPR001680 GO:0005515
Accr4g00999 567 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Accr4g00999 567 SMART Lish 5 37 IPR006594 GO:0005515
Accr4g00999 567 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Accr4g00999 567 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Accr4g00999 567 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Accr4g00999 567 MobiDBLite consensus disorder prediction 105 157 - -
Accr4g00999 567 Gene3D - 204 567 IPR015943 GO:0005515
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 352 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Accr4g00999 567 CDD WD40 212 523 - -
Accr4g00999 567 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Accr4g00999 567 Pfam LisH 8 33 IPR006594 GO:0005515
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Accr4g00999 567 SUPERFAMILY WD40 repeat-like 211 565 IPR036322 GO:0005515
Accr4g00999 567 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 350 388 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 391 430 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 308 347 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 263 306 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 208 247 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 484 523 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 526 564 IPR001680 GO:0005515
Accr4g00999 567 SMART WD40_4 433 481 IPR001680 GO:0005515
Accr4g00999 567 FunFam WD40 repeat-containing protein HOS15 204 567 - -
Accr4g00999 567 Pfam WD domain, G-beta repeat 485 523 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 527 561 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 267 306 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 393 430 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 435 481 IPR001680 GO:0005515
Accr4g00999 567 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Accr4g00999 567 Coils Coil 139 166 - -
Accr4g00999 567 Gene3D - 2 90 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 435 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 528 - -
Accr4g00999 567 PANTHER WD40 REPEAT PROTEIN 4 566 IPR045183 GO:0003714|GO:0016575
Accr4g00999 567 Coils Coil 102 122 - -
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Accr4g00999 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 490 IPR001680 GO:0005515
Accr4g00999 567 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00999 Accr-Chr4 9515078 9520354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00999 395 565 Miscellaneous Gene Families AT5G08390 29.480 5.25e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00999 K04508 - gmx:100783690 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00999 4 9515078 9520354 Accr4g00999 4 9515078 9520354 ECH