Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00943 ATGGCCGACGAAGCACAGTATTCATCGGGCACAGATACCACGTCTCTCAAGCGCAAGTATGAAGAGCCATCGCTCTCTCAATCAACTCACAGGTCCACTGGTTTCTCTGCGCCTATCGTGTCTACATCTCCCGATGGTGCTCATGCTCCGCCTTCATCCTATAACAGCGTCCCGCCCCCGGCGGCAACTGGTATAGAGCTTGCCAAGCAGCGAGCTCAGGAGGTTGCTGCTCGCCTCTTAAACAGCAGTGGAGCATCTGGTTTGGATGCCAAGCGTTCCAAGGTTGAGAACGGCGCTTCAGGATTTGATTCCATCGATGCAAAGCCCCAGTACTCAATCCCATCAGCTGCTCCCATTTCTTATGCCTATCAGGGTACTAGCAAAAAGATAGACATTCCGAATGGTAGGGTCGGCGTTATTATCGGTAAAGGTGGGGAGACAATCAAGTATCTGCAAACGCAGTCTGGAGCGAAGATCCAAGTTACACGTGATATGGATGCAGACCCAAATTCTCTAACAAGGACGGTGGAACTTATGGGAACTCCTGAACAAATTGCTGCTGCTGAGAAGTTTATTAATGAAGTTCTTGCCGAGGCTGAATCTGGAGGTTCTGGTATTGTTGCTAGGCGACTGACTGGACAAGCTGGGTCTGACCAATTTGTGATGAAGATTCCAAATAATAAAGTTGGACTTGTGATTGGAAAAGGAGGAGAAACAATAAAGAACATGCAAGCTCAGACTGGAGCAAGAATTCAGGTGATACCATTGCATCTTCCCCCAGGTGACACATCGACAGAAAGAACTTTACAAATTGATGGAACCAGTGAACAAATTGAGTCCGCTAAACAGTTGGTTAATCATGTCATTAGTGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGTTATCCTCAACAAGGTTACCAAGCCCGACCACCTACTAGCTGGGGTGCTCCTGGTGCTCCTATGCAACAACCTGGCTATGGCTATGTGCAGCCTGGAGCATACTCTGGCCCATCACCCCAATATAATATGCCTCAGCCACCATATCCAGGATATCCTACGCAGTCGTCTGGTGGATATTCCTCCAATTGGGATCAATCCTCTGCACCACCTCAACAGTCAACTCAGGGCGGTGGTTATGATTACTATGGTCAACAGCAACAGCAGCAGCAAAATGCTGGGGGTCCGCCCCCTGCAGCTGATGGGACTGCTTATAGTTATGGTCAGCCACCTTCCTCTGGTTATAACCATCCTGGCCAGGGATATCCTCAGGACAGTTATGGTGGGTATAGCGCACCAGCACAGTCAGGGTATGGGCAGGCACCTACATATGATCAGCAGCAAGGCTATGGCTCAGCCTCCAACTATGGTAGTGGCAGCAACCCAACACAGGAGGGCCATGCTCCCAACTATGGAGCTCAAGGAGACTCAACCCAGCCTCCTCCAGCTGTCCCTACTTCAATGGCCCAGCAAGGTTATGGTACTAACCAGCAGCCAAGCCCGAACCCAGCCACCTATCCTGCCCAAGGAACTGGCCAACCAGGTTATGGGATGCCTCCAACTTCTCAAGCAGCTTACGGCAGTCAACCCCCAGCACAGTCTGGCTATGGAGCTGGTTACGGGCCCCCTCCACCTCAAAAGCCTAGTGGCACTCCTGTTTATGGGCAGTCCACCCAATCACCTAGCGCAGCAGGAGGCTATGGCCAATCTGGCGCAGGGCAACCAGGATATCCTCCTGCTCAGCCCCCTTCAGGCTATGCTCAATCAGAATCTGCTCCACCTAGAGCCCCACCGCCATATGGTTCTGCAGGGCAACCAGGTTATGGTCCCCCGCCATATGGTGCTCCTCCTGGTGGTCAAGGTTATGGTCAGGCACCTTCATCATACAACAGCGGTTCTTATGGTGCCGGTTACACTCAACCTCCATCATATTCTGCTGATGGTACAGCGGCTCCAGCTGCCCAACAAGGTGGTGTCGCGAAAGCATCACCTCAAAGTTGA 2004 0.515 MADEAQYSSGTDTTSLKRKYEEPSLSQSTHRSTGFSAPIVSTSPDGAHAPPSSYNSVPPPAATGIELAKQRAQEVAARLLNSSGASGLDAKRSKVENGASGFDSIDAKPQYSIPSAAPISYAYQGTSKKIDIPNGRVGVIIGKGGETIKYLQTQSGAKIQVTRDMDADPNSLTRTVELMGTPEQIAAAEKFINEVLAEAESGGSGIVARRLTGQAGSDQFVMKIPNNKVGLVIGKGGETIKNMQAQTGARIQVIPLHLPPGDTSTERTLQIDGTSEQIESAKQLVNHVISENRLRNPSMSGGYPQQGYQARPPTSWGAPGAPMQQPGYGYVQPGAYSGPSPQYNMPQPPYPGYPTQSSGGYSSNWDQSSAPPQQSTQGGGYDYYGQQQQQQQNAGGPPPAADGTAYSYGQPPSSGYNHPGQGYPQDSYGGYSAPAQSGYGQAPTYDQQQGYGSASNYGSGSNPTQEGHAPNYGAQGDSTQPPPAVPTSMAQQGYGTNQQPSPNPATYPAQGTGQPGYGMPPTSQAAYGSQPPAQSGYGAGYGPPPPQKPSGTPVYGQSTQSPSAAGGYGQSGAGQPGYPPAQPPSGYAQSESAPPRAPPPYGSAGQPGYGPPPYGAPPGGQGYGQAPSSYNSGSYGAGYTQPPSYSADGTAAPAAQQGGVAKASPQS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00943 667 Pfam KH domain 221 286 IPR004088 GO:0003723
Accr4g00943 667 Pfam KH domain 129 194 IPR004088 GO:0003723
Accr4g00943 667 MobiDBLite consensus disorder prediction 354 397 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 26 50 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 552 568 - -
Accr4g00943 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 217 296 IPR036612 GO:0003723
Accr4g00943 667 MobiDBLite consensus disorder prediction 407 421 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 1 61 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 293 667 - -
Accr4g00943 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 127 203 IPR036612 GO:0003723
Accr4g00943 667 MobiDBLite consensus disorder prediction 430 531 - -
Accr4g00943 667 SMART kh_6 216 290 IPR004087 GO:0003676
Accr4g00943 667 SMART kh_6 124 197 IPR004087 GO:0003676
Accr4g00943 667 MobiDBLite consensus disorder prediction 593 618 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 624 651 - -
Accr4g00943 667 MobiDBLite consensus disorder prediction 293 312 - -
Accr4g00943 667 Gene3D K Homology domain, type 1 213 313 IPR036612 GO:0003723
Accr4g00943 667 Gene3D K Homology domain, type 1 121 212 IPR036612 GO:0003723
Accr4g00943 667 ProSiteProfiles Type-1 KH domain profile. 217 285 - -
Accr4g00943 667 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Accr4g00943 667 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 115 495 - -
Accr4g00943 667 FunFam KH domain-containing protein 212 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00943 Accr-Chr4 8975837 8981187 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00943 K13210 - jre:109008855 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00943 4 8975837 8981187 Accr4g00943 4 8975837 8981187 ECH