Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00901 ATGGCTGCCGCCAAGCCTTGGCGGGCAACTCCAAACCCCTCCCTTGTAACCTCCATAACTTCACTCCTTCAAACCCTGAATCCCCAGAACTCTAGCATCAGTTCCCAACCCCTTAATCAATTCGCTTCTCATCTCAATCCAGACTTGGTCATCCAAGTAATCAAGAGCCAGAACAACCCCTTCCACGCTCTCTTCTTCTTCAATTGGGCTTCCAATCCTCAACCTAACCCTAACAACTACTTCCATACTCCCTCTTGTTACGTCGCCATTACTGACATTTTACTTTCTCACTCCCTTTTCAGCACCGCTTCATCCCTCCTTCACCACTCTCACGGAGTCTCTGACTTCATCATCGCCAGATTTATCAAAGCTTTAGGTGATCGGGGCGATATTAGGGGTGCCATTCATTGGTTCCACTACGTTAAATCATTTGAAAGAGGCCGTTGTTTGTCCTCCTATAATTCGATTTTAGGTGTGCTGGTGAGAGCGAATCGAGTCGATTTGGCCAAGGCTTTCTACGATCAGCTTGTGAAGGAAGGTGTGGTGATTCCCAATGTTTATTCTTACACCACGATGATCAGAGGCTTCTGTAAAATGGGTATGGTGGATCATGCCAGGAAGGTGTTCGATGAAATGAAGTGTGACCCCAACTTGGTCACTTACAACACCGTGATCAATGCATTTTGTAAGAAAGGTGACATGGAGAGTGCCAAGAGGATTCTTTATCAAATGAATGAAAGTAAGAAATGTGTACCAGATGTGGTAACTTACACGACTTTGATTGATGGTTACTCTAAGAAAGGTGAATCGCACGAGGCCATGAACTGTATGATGGAGATGGCAAAGCATGGTATTGAGCCTAATGTCTTGACCTACAACGCACTTATAGAAGGTCTCTGTTTGAGCGGGAAGGTAGACGAAGGAAAGAAGATGATGACCAGGATGCGGTTAAATGGTTTAAAAGATGATATTGTCACACATACGAGCATAATGAAGGGGTTTTGCATAGCAGGCAAGTCTGATGAAGCAATCAAACACATGAAGGAAATGGTTAGTCTTGGGATGAATCCAGATCTGAAGTCATACGGCATTGTTATCAACGAGTGTTGCAAAATTAGAAAACCAGCTGAAGCAATTTCACTTCTAAGGGAAATGAGGGCGAGGAGCATCAAACCAAGCGCTTCAAATTTCAATGCGCTGTTTAGAGTTCTTGTGGACATAGGGAAGTTTCAAGAAGCCATTCTTCTTTTAAAGCAGATGCCAGAATTTGGCTGCTTGCCTAATTTCTTATCATATAGCGTAGTGATATATGGTCTTTGTAAAGTGAAGAGTAGGATGCAAGAAGTTGAAGAGCTGGTTAGGGACATGCTTCAGAATGGACATGAGCCCGATGCCACCATGTACAACTGCTTGCTTCAAGGGTACTGTGAGGACGGCAATGAGCAAATGGCAATTCAGACCATTTATGACATGATGGGCAATAACTTTGTGGTTAGTTTAGATAGCTTCTCTAATTTGGTCAAGGTTTTGCGCGGGAAGCAATATAACAAAGAGGTTGAGATGATATATGAAGAGATGCTTAGGAGATGCCCTGTACCTGAACCCCACGGGGATGCATACAAAAGAGTTTTACTTTTAACTGAGCATTCTTGCTTAAATTCGGCAGAGTAA 1671 0.4351 MAAAKPWRATPNPSLVTSITSLLQTLNPQNSSISSQPLNQFASHLNPDLVIQVIKSQNNPFHALFFFNWASNPQPNPNNYFHTPSCYVAITDILLSHSLFSTASSLLHHSHGVSDFIIARFIKALGDRGDIRGAIHWFHYVKSFERGRCLSSYNSILGVLVRANRVDLAKAFYDQLVKEGVVIPNVYSYTTMIRGFCKMGMVDHARKVFDEMKCDPNLVTYNTVINAFCKKGDMESAKRILYQMNESKKCVPDVVTYTTLIDGYSKKGESHEAMNCMMEMAKHGIEPNVLTYNALIEGLCLSGKVDEGKKMMTRMRLNGLKDDIVTHTSIMKGFCIAGKSDEAIKHMKEMVSLGMNPDLKSYGIVINECCKIRKPAEAISLLREMRARSIKPSASNFNALFRVLVDIGKFQEAILLLKQMPEFGCLPNFLSYSVVIYGLCKVKSRMQEVEELVRDMLQNGHEPDATMYNCLLQGYCEDGNEQMAIQTIYDMMGNNFVVSLDSFSNLVKVLRGKQYNKEVEMIYEEMLRRCPVPEPHGDAYKRVLLLTEHSCLNSAE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00901 556 Gene3D Tetratricopeptide repeat domain 389 549 IPR011990 GO:0005515
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Accr4g00901 556 Pfam PPR repeat 152 181 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 361 393 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 431 465 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 152 185 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 187 214 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 219 254 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 397 428 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 291 320 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 467 499 IPR002885 -
Accr4g00901 556 NCBIfam pentatricopeptide repeat 325 358 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Accr4g00901 556 Gene3D Tetratricopeptide repeat domain 117 245 IPR011990 GO:0005515
Accr4g00901 556 SUPERFAMILY HCP-like 226 427 - -
Accr4g00901 556 Pfam PPR repeat family 397 441 IPR002885 -
Accr4g00901 556 Pfam PPR repeat family 252 300 IPR002885 -
Accr4g00901 556 Pfam PPR repeat family 323 371 IPR002885 -
Accr4g00901 556 Pfam PPR repeat 214 244 IPR002885 -
Accr4g00901 556 Pfam PPR repeat 184 213 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Accr4g00901 556 Pfam Pentatricopeptide repeat domain 452 510 IPR002885 -
Accr4g00901 556 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 34 372 - -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Accr4g00901 556 Gene3D Tetratricopeptide repeat domain 246 313 IPR011990 GO:0005515
Accr4g00901 556 Gene3D Tetratricopeptide repeat domain 314 388 IPR011990 GO:0005515
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 463 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Accr4g00901 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00901 Accr-Chr4 8553126 8554796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00901 145 544 Glycosyltransferase AT1G05670 28.395 1.59e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00901 - - qsa:O6P43_015860 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00901 4 8553126 8554796 Accr4g00901 4 8553126 8554796 ECH