Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00888 ATGGGTATACGTAGAGAATTGCTGGCCATAATCTTGATATGGCTCGCTGTGTTTGATGGATGTTCAAACGTTGTCGTCAATGGCCAACTTAATTATAAAGAAGCTCTCACAAAGTCCCTCATTTTTCTAGAGGCACAACGTTCAGGGAAGCTCCCTCCCAATAACAGAGTGCCCTGGAGAGGAGACTCTGCACTTGACGACGGAAAACTCGCCAATGTGGACCTTTCTGGAGGATACTATGATGCAGGAGATAACGTCAAATATGGTTTGCCGTTGGCTTTCACAGTCACCACTCTTTCATGGGCTGCAGTTTATTTCAAGGACGAGATTCATGCTGCCAATGAATTGAATCATGTTCGTGACGCCATTAAATGGGGCACCGATTATCTTCTCAAATGTTCTTCCCGACGCAATCGCTTATATGTGCAGGTGGGGGACCCAGACGAGGATCACCATTGTTGGGTTAGACCAGAGAAAATGAAGACAAAGAGAACAGTCTTGCATATAGGTGATGGGACGCCAGGTACAGAGATTGCAGCTGAAACTGCAGCAGCTTTTGCCTCTTCTTCTATTGTTTTTAGGAGTGTCGATCGTGCTTATGCTCGCCGTCTCCTCAACAAGGCCAAACTGATGTTCAAAATGGCAAAATCCCAAAAGGGAACTTATGACGGAGAATGTCCTTTCTACTGCTCTTTTTCTGGCTACAATGATGAGTTGTTGTGGGCAGCAACATGGCTTTTTATTGCAACCAAGAAGCCTGTGTATTTGAAATATGTTCAAGAGGAAGCCATCAGTGCTTATGTGAATGAGTTTAGTTGGGATCTCAAATACGCTGGAGCTCAAGTTCTTCTCACTAGGTTACTTTATGAGGGAGTACCGAAATTGGAAACATTCAAATATCAAGCCGATAGTTTCATATGCTCCGTCCATCCTGAGAGTCCCTACAATCAGATTAAATTAACTCCAGGTGGCGTGATTCACTTGAGGGATGGAGCCAACACGCAATATGTGACCGGCACGGCAATGATATTCATCTTCTACGGCGATATTCTGGAAGAACACAAACAAACTGTCACTTGTGGAACTAAAAAATTCACCTCAGCTGACCTCTTCAGCTTCGCCAAAAGCCAAATGGATTACATCCTGGGGACGAACCCAGAGAGAAGATCTATAATGGTAGGGTTTGGAAACAACCCACCAAAGCAAGCACACCACAGAGGAGCGTCGGTGCCGATGTCGTCGGCGAACGAGGAGGTGTCGTGTCCTGAGAGCTTCGCCAAATGGTTACAACGCGACGGGCCAAACCCTAACGAACTAACCGGAGCCATACTTGGAGGACCTGACAAAAACGATCACTTTGACGATAAACGTACCGATTCCTCAGCCACTGAGCCATGCACCTACGTCAACTCTCTCGCCGTTGGCCCCCTCGCCAAGCTCGCATCTATCCATAATAAATAA 1461 0.4627 MGIRRELLAIILIWLAVFDGCSNVVVNGQLNYKEALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLSGGYYDAGDNVKYGLPLAFTVTTLSWAAVYFKDEIHAANELNHVRDAIKWGTDYLLKCSSRRNRLYVQVGDPDEDHHCWVRPEKMKTKRTVLHIGDGTPGTEIAAETAAAFASSSIVFRSVDRAYARRLLNKAKLMFKMAKSQKGTYDGECPFYCSFSGYNDELLWAATWLFIATKKPVYLKYVQEEAISAYVNEFSWDLKYAGAQVLLTRLLYEGVPKLETFKYQADSFICSVHPESPYNQIKLTPGGVIHLRDGANTQYVTGTAMIFIFYGDILEEHKQTVTCGTKKFTSADLFSFAKSQMDYILGTNPERRSIMVGFGNNPPKQAHHRGASVPMSSANEEVSCPESFAKWLQRDGPNPNELTGAILGGPDKNDHFDDKRTDSSATEPCTYVNSLAVGPLAKLASIHNK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00888 486 SUPERFAMILY Six-hairpin glycosidases 31 484 IPR008928 GO:0005975
Accr4g00888 486 Gene3D - 26 486 IPR012341 GO:0005975
Accr4g00888 486 FunFam Endoglucanase 28 485 - -
Accr4g00888 486 Pfam Glycosyl hydrolase family 9 32 475 IPR001701 GO:0004553|GO:0005975
Accr4g00888 486 PANTHER ENDO-1,4-BETA-GLUCANASE 17 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00888 Accr-Chr4 8432437 8434575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00888 5 482 Glycoside Hydrolase AT3G43860 68.685 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00888 K01179 - gmx:100811509 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00888 4 8432437 8434575 Accr4g00888 4 8432437 8434575 ECH