Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00843 ATGGCAACCCGAAGAAATTTAAGACTAACAAAACCCGCTTTTGCTGCCATTAGCGTGTCTAGGACCTCTCACAGAGCTCCCTATCATTATCGCCCCGCTCTCGTTCCCCGTGAACGTGGGTTATCTGGCCTCCCTTCTACTTCACCGAAGTCAAATGCTCAAGATTTCTTGTCTCAGGCTTGGATCATCAGCAGAGCTGCACCGAGTAATTCGGCCTCCGCCCAGTTTCTATCTTACTCTTTCACTCGCCACTTCCACTCTTCTAATCCCTTGTATCGCTCAGCTGCTAGCACTCAGATTACCCCCGATGAGTTCACAGAGCTGGCATGGGAAGGTATTATTGGTGCCATCGATGCAGCACGAGTTAGCAAACAACAAGTTGTGGAGTCCGAGCATTTAATGAAAGCCTTATTGGAGCAAAAAGATGGTCTAGCCCGACGAATATTTACCAAGGCAGAACTGGACAACACATCAGTTTTGCAGGCCACAGATGACTTCATATCTCGGCAACCGAAGGTAACAGGTGACACAAGTGGACCTATGATGGGTTCACACCTTGTTTCTCTCTTGGACAATGCACGGAAATACAAGAAAGAAATGGGGGATGGATATATTTCTGTTGAGCATTTTTTGTTGGCATTTCTATCGGATAAGAGGTTTGGGCAACAGTTATTCAAGAACCTCAACATTAGTGAGGAAATTTTGAAAGATGCTATCCAGGCTGTTCGTGGAAGTCAAAGAGTGACTGACCAAAATCCTGAGGGAAAATATGAGGCGCTAGACAAATATGGAAATGACTTGACTGAACTTGCTAGGCGTGGCAAACTCGATCCAGTCATTGGTCGAGATGACGAAATTCGGCGTTGTATTCAGATACTGTCAAGAAGAACAAAAAATAACCCTGTTATTATTGGCGAACCTGGTGTTGGGAAAACTGCAATTGCTGAAGGATTAGCTCAAAGGATAGTGCGTGGAGATGTTCCTGAACCATTGTTGAACAGAAAGTTGATCTCCCTTGATATGGGTTCATTGGTTGCTGGCGCCAAGTATCGTGGGGACTTCGAGGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACGGCATCAAATGGGCAAATAATTTTATTTATTGATGAGATTCATACTGTTGTTGGTGCAGGAGCTACAAGTGGTGCAATGGATGCTGGGAACTTATTGAAGCCAATGCTTGGGCGAGGTGAACTTCGTTGTATTGGAGCAACTACACTGAATGAATATAGAAAGTACATTGAAAAGGATCCTGCACTTGAGCGCAGGTTTCAACAAGTGTTTTGTGGCCAACCTTCAGTTGGAGACACCATATCCATTCTTCGTGGTTTACGAGAACGCTATGAGTTGCACCATGGAGTGAAAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATATATAACAGAACGCTTTCTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTAAAAATGGAGATTACATCAAAGCCAATTGAGTTGGATGAAATAGATAGAGCCGTCCTGAAGTTGGAGATGGAAAAGTTGTCTCTAAAAAATGACACCGATAAAGCATCCAAAGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTCACTTAAACAGAAGCAAAGAGAATTGGCAGAACAATGGGATCGTGAAAAAGCCTTAATGAATCGGATAAGGTCAATTAAAGAAGAGATTGATAGAGTTAACCTTGAGATGGACGCTGCTTGGCGTGAGCAAGACCTTAATCGTGCCGCGGAGCTTAAGTATGGAACTCTGGTTTCCCTTCAGCGTCAATTAGAACAAGCTGAAAAGAACCTGGCTGACTTCCAAATTTCTGGACAATCCTTACTTCGAGAAGAGGTCACCGATCTTGATATTGCTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAACCTGCAACAAACAGAGAGAGAAAAGTTGGTCTCGCTGGAACAAGTTCTTCATAAGAGGGTAGTTGGACAGGATATTGCTGTGAAATCTGTGGCTGATGCCATCAGACGTTCAAGGGCAGGATTGTCCGACCCAAATCGTCCCATTGCAAGCTTCATGTTCATGGGTCCAACCGGTGTTGGCAAAACTGAGCTTGCAAAGGCTTTGGCTGGTTATCTGTTTAACACTGAAAATGCTCTTATTAGAATTGATATGAGTGAGTATATGGAGAAACATGCAGTTTCACGTTTGGTTGGGGCTCCCCCGGGTTATGTTGGTTATGAAGAAGGTGGACAGTTAACTGAAGTTGTTCGTAGAAGACCTTACTCAGTGGTACTTTTTGATGAAATAGAGAAGGCTCATCATGATGTCTTCAACATTTTGTTGCAATTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATAATGACTTCAAACATTGGGTCTCATCACATACTTGAAACTCTTAGGAGTACAGAGGGCGACAGAAATGCCCTTTATGACAAAATGAAAAGACAAGTAATTGAGTTGGCTCGGCAAACATTCCGTCCTGAGTTTATGAATCGTATTGATGAATATATTGTTTTCCAGCCTTTGGATTCCCAACAGATCAGCAAAATAGTGGAGCTTCAGATGGCACGGGTCAAGGACAGGCTCAAGCAAAAGAAAATAGATCTCCATTACACAAAAGAAGCTGCAGAACTTCTTAGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTCAAAAGAGTTATACAACAATTGGTTGAGAATGAAATCGCAATGGGAGTACTAAGGGGAGATTTTAGAGAAGAGGACTCAATTGTTGTCGATGTTGATGCGACCCCAATCGCCAAGGACCTTCCGCCCCAAAAGAAACTGGTAATCAAGAAATTGGAGAACCCTGCTGCGGATGCTATGGTTGCAAATGATTGA 2970 0.4303 MATRRNLRLTKPAFAAISVSRTSHRAPYHYRPALVPRERGLSGLPSTSPKSNAQDFLSQAWIISRAAPSNSASAQFLSYSFTRHFHSSNPLYRSAASTQITPDEFTELAWEGIIGAIDAARVSKQQVVESEHLMKALLEQKDGLARRIFTKAELDNTSVLQATDDFISRQPKVTGDTSGPMMGSHLVSLLDNARKYKKEMGDGYISVEHFLLAFLSDKRFGQQLFKNLNISEEILKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVGDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSSLKQKQRELAEQWDREKALMNRIRSIKEEIDRVNLEMDAAWREQDLNRAAELKYGTLVSLQRQLEQAEKNLADFQISGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVSLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALIRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHHILETLRSTEGDRNALYDKMKRQVIELARQTFRPEFMNRIDEYIVFQPLDSQQISKIVELQMARVKDRLKQKKIDLHYTKEAAELLSVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFREEDSIVVDVDATPIAKDLPPQKKLVIKKLENPAADAMVAND 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00843 989 Pfam AAA lid domain 442 543 IPR041546 -
Accr4g00843 989 Coils Coil 511 531 - -
Accr4g00843 989 Coils Coil 564 584 - -
Accr4g00843 989 ProSitePatterns Chaperonins clpA/B signature 2. 734 752 IPR028299 -
Accr4g00843 989 FunFam Chaperone protein ClpB3, chloroplastic 101 247 - -
Accr4g00843 989 FunFam ATP-dependent chaperone ClpB 875 964 - -
Accr4g00843 989 Pfam ATPase family associated with various cellular activities (AAA) 303 435 IPR003959 GO:0005524|GO:0016887
Accr4g00843 989 Coils Coil 533 560 - -
Accr4g00843 989 Gene3D - 875 972 - -
Accr4g00843 989 SUPERFAMILY Double Clp-N motif 103 255 IPR036628 -
Accr4g00843 989 SMART AAA_5 297 441 IPR003593 GO:0016887
Accr4g00843 989 SMART AAA_5 700 857 IPR003593 GO:0016887
Accr4g00843 989 ProSiteProfiles Clp repeat (R) domain profile. 102 245 IPR004176 -
Accr4g00843 989 CDD AAA 280 440 - -
Accr4g00843 989 CDD RecA-like_ClpB_Hsp104-like 661 872 - -
Accr4g00843 989 Gene3D - 652 873 IPR027417 -
Accr4g00843 989 PANTHER ATP-DEPENDENT CLP PROTEASE 106 980 - -
Accr4g00843 989 Coils Coil 598 632 - -
Accr4g00843 989 Pfam C-terminal, D2-small domain, of ClpB protein 875 955 IPR019489 -
Accr4g00843 989 Gene3D - 248 441 IPR027417 -
Accr4g00843 989 FunFam Chaperone clpB 1, putative 248 441 - -
Accr4g00843 989 Gene3D - 100 247 IPR036628 -
Accr4g00843 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 778 796 IPR001270 GO:0005524
Accr4g00843 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 704 722 IPR001270 GO:0005524
Accr4g00843 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 811 825 IPR001270 GO:0005524
Accr4g00843 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 749 767 IPR001270 GO:0005524
Accr4g00843 989 FunFam ATP-dependent Clp protease subunit 653 873 - -
Accr4g00843 989 Pfam AAA domain (Cdc48 subfamily) 699 868 IPR003959 GO:0005524|GO:0016887
Accr4g00843 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 648 IPR027417 -
Accr4g00843 989 ProSitePatterns Chaperonins clpA/B signature 1. 393 405 IPR018368 GO:0005524
Accr4g00843 989 FunFam ATP-dependent chaperone ClpB 442 647 - -
Accr4g00843 989 NCBIfam ATP-dependent chaperone ClpB 105 960 IPR017730 GO:0005737|GO:0009408|GO:0042026
Accr4g00843 989 Gene3D - 442 647 IPR027417 -
Accr4g00843 989 Pfam Clp amino terminal domain, pathogenicity island component 193 244 IPR004176 -
Accr4g00843 989 Pfam Clp amino terminal domain, pathogenicity island component 118 167 IPR004176 -
Accr4g00843 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 957 IPR027417 -
Accr4g00843 989 SMART ClpB_D2_small_2 875 964 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00843 Accr-Chr4 7912607 7919141 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00843 K03695 - qsa:O6P43_015753 1629.38