Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00813 ATGTCTGCGGAGTCACAGCATATGATCTTAGCCATATTGGACATGCTCGCGTCTATGTCAATTTTGACGTTCTTTACAGGCAGATATCTTAAGCATATGGAATTTGAAGTCTCTTATGTTCGTAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCAAATGAGTTAGGAGAGGATCCAATAAGTTTGAGCCAACGCTATTGTGAAGAGTTTAGTCAAGACATGACAACTCTTCATTGTCTACCACCTTCTGTGGAGCCACGAGTCTCAGAGCACATGCCCCAAATAATCAATATGATTGAGCAGATTATTAATAATGGGTATGCCTACATTGTTGATGGGGATGTGTACTTTGACGTTGAAAATTTTCCAGAATATGGGAAGTTATCTGGACGAGATCTTCAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCTCATCTTGGTCACTCTTTTGATATCCATGGTGGAGGGATCGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTAATATTAGTCTCTGGATGCACAATGGTTTTGTCACTGTGGACTCAGAGAAGATGTCCAAATCTCTGGGAAATTTTTTCACCATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGAGCCCATTATCGATCTCCTATTAACTACTCTCATGTCCAGCTTGAAAGTGCTTCAGACCGTGTTTTCTACATATATGAGACTTTACATGAATGTGAAAGCTTTCTGTGCCAACATGATCTCACAAATAGGAAGGATTCCATCCCAACTGATACTTTAGATATTATTAACAAGTTTCATGATGTTTTTGTGGCTTCAATGTCCGATGACCTCCATACCCCAGTTGTACTGGCTGCACTGTCTGACCCATTAAAAGCAATCAATGATCTGCTACATACTCGTCAGGGGAGGAAACGAGCATTGCGAATCGAATCACTTTCAGCTCTGGAGAAGAGTATCAGCAACGTTTTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCTGAGGTTTTACAGCAGCTTAACGAAAAGGCTCTAAAGCGTGCGAACTTGACAGAAGAACAAGTCTTAGAGAAAATTAAAGAACGGGCTGCTGCTAGAATGAACAAGGAGTATGAAAAGTCAGATGCAATTAGGAATGATTTGGCAGTTTTAGGTATTGCTCTGAAGGACAGTCCGGATGGTACAACGTGGAGGCCCACCATTCCTCTTTCACTTCAAGAACAGCAGACTGCTGCACCTTGA 1431 0.4193 MSAESQHMILAILDMLASMSILTFFTGRYLKHMEFEVSYVRNFTDVDDKIIARANELGEDPISLSQRYCEEFSQDMTTLHCLPPSVEPRVSEHMPQIINMIEQIINNGYAYIVDGDVYFDVENFPEYGKLSGRDLQDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAHLGHSFDIHGGGIDLVFPHHENEIAQSCAACKKSNISLWMHNGFVTVDSEKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSHVQLESASDRVFYIYETLHECESFLCQHDLTNRKDSIPTDTLDIINKFHDVFVASMSDDLHTPVVLAALSDPLKAINDLLHTRQGRKRALRIESLSALEKSISNVLTVLGLMPASYSEVLQQLNEKALKRANLTEEQVLEKIKERAAARMNKEYEKSDAIRNDLAVLGIALKDSPDGTTWRPTIPLSLQEQQTAAP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00813 476 FunFam Cysteine-tRNA ligase-like protein 129 279 - -
Accr4g00813 476 Gene3D HUPs 18 280 IPR014729 -
Accr4g00813 476 Pfam DALR domain 332 392 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Accr4g00813 476 PANTHER CYSTEINYL-TRNA SYNTHETASE 28 472 IPR024909 -
Accr4g00813 476 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 317 462 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Accr4g00813 476 NCBIfam cysteine--tRNA ligase 27 461 IPR015803 GO:0004817|GO:0005524|GO:0006423
Accr4g00813 476 SMART dalr_2_4 331 400 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Accr4g00813 476 Gene3D - 281 462 - -
Accr4g00813 476 Pfam tRNA synthetases class I (C) catalytic domain 26 287 IPR032678 -
Accr4g00813 476 SUPERFAMILY Nucleotidylyl transferase 26 287 - -
Accr4g00813 476 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 280 462 - -
Accr4g00813 476 Coils Coil 396 416 - -
Accr4g00813 476 PRINTS Cysteinyl-tRNA synthetase signature 166 184 IPR024909 -
Accr4g00813 476 PRINTS Cysteinyl-tRNA synthetase signature 37 46 IPR024909 -
Accr4g00813 476 PRINTS Cysteinyl-tRNA synthetase signature 197 218 IPR024909 -
Accr4g00813 476 Hamap Cysteine--tRNA ligase [cysS]. 10 463 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00813 Accr-Chr4 7679944 7683010 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00813 K01883 - gmx:100786700 774.622