Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00767 ATGGCTGTAGCATCTGCTAGATTCCCGTTTGGATTTTCCGTTCACTCCAACCGGAAAGTGGACATTTCAATTTCCGAGTTTCCTCTGAATGTGGACGTTTCAAGAATTAGTTTGTGCCCAAGCTCTCTGTCCTCCACAGCTTCAAAGGATTCTGTTGACCGCATATGTGCACGTCCTAATATCGATGATTTCAGCTGGGAGAAATTGCCAACGCCCTTGCTTGATGCAATTGATAATCCTCTTTGTTTGAAGAACTTATCTCTTAAGGAACTCAAGCAGCTGGCCCGTGAAATTCGATTGGAATTGTCTTTGATGTCGTTAGATGAACGCATTTCATTTGAGGCAAGTTTGGCAGTGGTGGAACTGACAATTGGAATACACCATGTTTTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGTGACCAAACATATGCACATAAGATTCTTACTGGAAGGAGACCCCTCATGAAAACAGTGAGGCAAAAGAATGGCCTTTCAGGATTTACATCCCGATCTGAGAGTGAATATGATGCATTCAGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATCTGAAGGGGAGGCGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTTTATGAAGCAATGGGCAATGCAGGGTATTTAGACTCAGATATGATTGTGATTCTGAATGACTGCCGTCACTCTTTACATCCAAAAGTCGAGGAGGGCCCGAGGGCATCAATTAATGCATTATCCGGTACCCTAAGCAGGATCCAGTCCAGTAAATCCTTCCGAAGGTTTAGAGAAGTTGCTAAAGGTGTTACAAAGCGAATAGGGGGAAGTATGCATGAACTGGCAGCAAAAGTTGATGAATATGCACGTGGTATGATGGGTCCTCTAGGGTCCACTCTTTTTGAAGAGCTTGGGTTGTACTACATTGGCCCTGTGGATGGACACAACATTGAGGAGCTAATTTGTGTTCTAAAACAAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGATTCATGTAATAACTGGTGAAAACCATGTAATGGAATATAACGAGAGTAATATAGCAGATGGCCAGCAGGATGGCTCTAGCAACTTTGATTCATTTCATCAAGCTAGTCAACGTCGAACATATAGTGATTGCTTGGCGGAAACTTTGGTCATGGAAGCAGAGAAAGATAAAGATATTGTGTTAGTTCATGCAGGAATTTTGACGGAACCATCACTTCAATTGTTTCGACAAAAAATGCCAGAAAAGTATTTTAATGTGGGTATGGCTGAGCAGCATGCAGTTACATTTGCATCTGGTTTGGCATGTGGGGGTTTGAAGCCGTTTTGCATGATACCTTCCTCCTTCCTTCAGAGAGCTTATGACCAGGTGATCCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATCACAAGTGCAGGTTTGGTAGGTTCTGATGGTCCCCTCCATTGTGGAGCATTCGATATAACGTTCATGTCATGCTTGCCAAATATGATAGTCATGGCACCATCTGATGAGGTTGAGCTTGCGAACATGGTGGCTACTGCTAGTCATGTCAATGACCGGCCAATTTGCTTCCGGTATCCGAGAGGTGCTTTAGTTAGCAGCAACTACACTGCATGCAATGGAGTACCCCTTGAGATTGGAAAAGGGAGAGTTATTGTTGGTGGAAAAGATGTTGCTCTACTGGGATATGGATCAATGGTTCAGAACTGCCTGAACGCTTACGTACTTCTTTCAAAGCTAGGGATTGAGGTCACAGTTGCTGATGCCAGGTTCTGCAAGCCCCTGGACATCGATCTTCTCAGGCAGCTTTGTGAAAACCATTCCTTCCTGATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTGGCCCAGTTTTTTGCTCTTGATGGACAGCTTGATGGAAAAATTAAGTGGCGACCTATTGTCTTACCGGACTGTTACATAGAGCATGCATCACCAAGTGAGCAGCTTGATCAGGCAGGACTGACCGGACACCACATTGCCGCCACGGCTTTGAGCTTGCTCGGCCGTCCCCGTGAAGCCCTTCATTTTATGATCCCGTGA 2142 0.45 MAVASARFPFGFSVHSNRKVDISISEFPLNVDVSRISLCPSSLSSTASKDSVDRICARPNIDDFSWEKLPTPLLDAIDNPLCLKNLSLKELKQLAREIRLELSLMSLDERISFEASLAVVELTIGIHHVFHAPVDKILWDVGDQTYAHKILTGRRPLMKTVRQKNGLSGFTSRSESEYDAFSAGHGCNSISAGLGMAVARDLKGRRERVVAVISNWTTMAGQVYEAMGNAGYLDSDMIVILNDCRHSLHPKVEEGPRASINALSGTLSRIQSSKSFRRFREVAKGVTKRIGGSMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLKQVASLDSMGPVLIHVITGENHVMEYNESNIADGQQDGSSNFDSFHQASQRRTYSDCLAETLVMEAEKDKDIVLVHAGILTEPSLQLFRQKMPEKYFNVGMAEQHAVTFASGLACGGLKPFCMIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPLHCGAFDITFMSCLPNMIVMAPSDEVELANMVATASHVNDRPICFRYPRGALVSSNYTACNGVPLEIGKGRVIVGGKDVALLGYGSMVQNCLNAYVLLSKLGIEVTVADARFCKPLDIDLLRQLCENHSFLITVEEGSIGGFGSHVAQFFALDGQLDGKIKWRPIVLPDCYIEHASPSEQLDQAGLTGHHIAATALSLLGRPREALHFMIP 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00767 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Accr4g00767 713 CDD TPP_PYR_DXS_TK_like 399 551 - -
Accr4g00767 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Accr4g00767 713 Gene3D - 570 701 IPR009014 GO:0003824
Accr4g00767 713 Gene3D - 66 363 - -
Accr4g00767 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Accr4g00767 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 454 IPR029061 -
Accr4g00767 713 SMART Transket_pyr_3 392 557 IPR005475 -
Accr4g00767 713 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 699 IPR005477 GO:0008661|GO:0016114
Accr4g00767 713 CDD TPP_DXS 113 358 IPR005477 GO:0008661|GO:0016114
Accr4g00767 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Accr4g00767 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 554 IPR029061 -
Accr4g00767 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
Accr4g00767 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 43 708 IPR005477 GO:0008661|GO:0016114
Accr4g00767 713 Gene3D - 392 564 - -
Accr4g00767 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Accr4g00767 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 702 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00767 Accr-Chr4 7350438 7355904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00767 435 649 Acyl Lipid Metabolism Gene Families AT1G55510 23.932 1.92e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00767 K01662 - pvy:116115702 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00767 4 7350438 7355904 Accr4g00767 4 7350438 7355904 ECH