Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00679 ATGGGGATAGCAGAAGCATGCTCCAGGATCATTGGAGACTTTTTACAAGCTTTTAGACGTTCACAAGAAAGCTCAAAGACTCAAGTAATTGATCGCAATGATCCTCCATGCAAGCCCCAGCATTTGATTAAACTTGATGACAAGATGGTGAGTGCTCTAATCACTGTGTTTGGCATGGAAAACAATGGAAGAATCAAGAAGGAAAACGCAAGGCAAGTGGTAGAGAAGCTGGGTTTGCTGTATGGTTCAGAGGAAGATAAGTCCTCAGGGTTTGAACTTCCTAGCCAGGAAGATGAAGAGGTTCTGGTAGAAGAAGTGCTCGATGGATTGGAGGATATGTCGAAGCGCAGCGAGCTGTTACACGAGGCCTTCAAAATCTTCGACGAAGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTTCTGGATTGCTTGGGTTTGGATAAAGGTTGGGACATGAGTGCCATTGAGAAAATGGTGAATGTTGTAGATTTGAACTTTGATGGTAAGGTTGATTTCAGTGAGTTTGAGTTGATGATGGGGTAG 552 0.4366 MGIAEACSRIIGDFLQAFRRSQESSKTQVIDRNDPPCKPQHLIKLDDKMVSALITVFGMENNGRIKKENARQVVEKLGLLYGSEEDKSSGFELPSQEDEEVLVEEVLDGLEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSAIEKMVNVVDLNFDGKVDFSEFELMMG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00679 183 CDD EFh 120 178 IPR002048 GO:0005509
Accr4g00679 183 Pfam EF-hand domain pair 119 182 IPR002048 GO:0005509
Accr4g00679 183 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Accr4g00679 183 ProSiteProfiles EF-hand calcium-binding domain profile. 153 183 IPR002048 GO:0005509
Accr4g00679 183 Gene3D - 43 183 - -
Accr4g00679 183 PANTHER CALCIUM BINDING PROTEIN 54 182 - -
Accr4g00679 183 FunFam Calmodulin A 52 183 - -
Accr4g00679 183 SUPERFAMILY EF-hand 46 182 IPR011992 -
Accr4g00679 183 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Accr4g00679 183 SMART efh_1 157 183 IPR002048 GO:0005509
Accr4g00679 183 SMART efh_1 119 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00679 Accr-Chr4 6586799 6587350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00679 120 182 EF-hand Containing Proteins AT4G20780 58.730 3.04e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00679 - - gmx:100527700 253.062