Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00449 ATGGAGCTTTTTAACAACGACGATCTTAACTTTGTTGACGACGGCTATTACGACGTCCCCGATTTTGAGGACGATGACCCTTTCGCCGACAATCGCTCTCACAGCAGCACTGTCTCTCATTCTCCGGACTCCGACTATGAAGATGATTTTGAAATGAGTCAATCGAAGACTGATACTTCTGCTCTGGAAGCCAGGAATGGGAAAGATATTCAGGGAATTCCTTGGGAGAGGCTTAATTATACCAGGGACAAATACCGTGAGACTCGACTAAAGCAGTACAAGAACTATGAGAATCTCTCTCGCTCTCGGGATGATCTTGACAAGGAGTGCCTTGAAGTGAGGAAAGGAAATTCCTTCTATGACTTCCAGTTCAATACAAGGATAGTCAAATCAACAATAGTGCATTTTCAGCTGAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAAAACTATTCTGTGATGCATTGGTCGTCTTTACTTCGGAAGAGTAAAGAAGTACTGAATGTGGTTAAACCCATTGTTCCAACTGTTAACCACCCTGGGTTTTTTGCTCAACCTATCTCCAGAGTACAAATAAGCACCATGGCTGTCAAGGAAAATTTAATGGTAGCGGGTGGTTTCCAGGGTGAGCTTATTTGCAAGAATCTGAATCAACCTGGAGTTGCTTTCTGTAGTAAAATAACTACCGATGATAATGGTATAACGAATGCTGTGGATGTTTACCGTAATCCCAGTGGTTCTTTGAGGGTCATGACGGCAAATAATGACGCCCAGGTTCGGGTTTTCGATGCTGATAATTTTGCTTCTCTTGGTTGCTTCAAATATGACTGGTCTGTTAACAATATTTCCGTTAGTCCCGATGGGAAGTTGTTCGCTGTTCTTGGGGATAGTACCGAGGGTTTGATAACTGAGGCTAACACCGGAAAGGTTACTGGGAGCCTGAAAGGACACTTGGACTATGGTTTTGCCTCAGCATGGCACCCAGATGGGCGAATATTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACGCTCCCTTGCTGTACTCAAGGGAAGAATGGGAGCAGTGAGAGCTCTAAGATTCACTTCAGATGGACGGTTTCTGGCTATGGCTGAGCCTGCAGATTTCGTCCATATTTTTGACTCTCACAGTGATTATGAGCAAGGACAAGAAATTGATTTATTTGGTGAGATCGCTGGTATTTCCTTTAGCCCAGACACGGGGGCTCTATTTGTTGGGATAGCTGATCGTAGTTATGGAAGCTTGTTAGAGTTCAACCGGAAATGTTGTAATCAATATTTGGATGCTATATTTTAG 1356 0.4344 MELFNNDDLNFVDDGYYDVPDFEDDDPFADNRSHSSTVSHSPDSDYEDDFEMSQSKTDTSALEARNGKDIQGIPWERLNYTRDKYRETRLKQYKNYENLSRSRDDLDKECLEVRKGNSFYDFQFNTRIVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRKSKEVLNVVKPIVPTVNHPGFFAQPISRVQISTMAVKENLMVAGGFQGELICKNLNQPGVAFCSKITTDDNGITNAVDVYRNPSGSLRVMTANNDAQVRVFDADNFASLGCFKYDWSVNNISVSPDGKLFAVLGDSTEGLITEANTGKVTGSLKGHLDYGFASAWHPDGRILATGNQDTTCRLWDIRNLSRSLAVLKGRMGAVRALRFTSDGRFLAMAEPADFVHIFDSHSDYEQGQEIDLFGEIAGISFSPDTGALFVGIADRSYGSLLEFNRKCCNQYLDAIF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00449 451 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Accr4g00449 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Accr4g00449 451 SMART WD40_4 312 351 IPR001680 GO:0005515
Accr4g00449 451 SMART WD40_4 355 394 IPR001680 GO:0005515
Accr4g00449 451 SUPERFAMILY WD40 repeat-like 191 430 IPR036322 GO:0005515
Accr4g00449 451 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 448 - -
Accr4g00449 451 Gene3D - 229 446 IPR015943 GO:0005515
Accr4g00449 451 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Accr4g00449 451 MobiDBLite consensus disorder prediction 22 63 - -
Accr4g00449 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Accr4g00449 451 FunFam WD-40 repeat family protein 232 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00449 Accr-Chr4 4328447 4333481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00449 297 431 Miscellaneous Gene Families AT5G08390 28.667 8.92e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00449 - - gmx:100775453 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00449 4 4328447 4333481 Accr4g00449 4 4328447 4333481 ECH