Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00424 ATGGATTTGTCGGCTGCTCAGTCGGGCCTATCTCTTGGCTTAAACGGACAGATTTCGTCACCGCCTTTGGCAGGCTATGTTGATGATAATTTAGCTTCCTTTCGACAGAATTCGAGCTTTGGTAGTTCCTCCAGTACAAATCCTTTTGTTCCATTGCAACTGCTCGAGGAAAAAGACGACAAAGTTAGGGTCAAATCCAGTGAAGAAACAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAAGGAGCAGTGGAAGATGAAGCGATTGACTTTATGGGTCGGCCTGTGTGTGCGAAGAGGAAATTAGAGGGACATCCGAATTTCTCTTCCCATCCTCCAAAGCGGCTTGCCGTCAACTGGGGGCTTGACGCGAGGCGAGCTTCAGTGCAGGCTTTGGCGAATGAGCCAATGGAGGTAGCTGACCCCGAGATTCATGAAATAATTGGGAAGGAAAAGCGGAGACAGTTCTCAGGAATAGAATTGATCGCTTCTGAGAATTTTGTATGCAGAGCTGTCATGGAAGCTTTGGGAAGTCATTTGACGAACAAGTACTCTGAGGGAATGCCCGGAGCCAAATACTACACAGGGAATCAGTTTATTGATCAGATGGAATTGCTTTGCTGTAAGCGTGCACTGGCTGCCTTCGATCTCAATCCAAGCAAGTGGGGCGTGAACGTTCAGCCTTACTCATGTACTTCTGCTAACTTTGCCGTGTACACTGGTATTTTGCATCCAGGTGATCGAATGATGGGTCTGGATCTGCTATCCGGTGGGCATCTGAGTCATGGATATTATACCCCCAGTGGAAAGAAGATTTCTGCGGCATCTATATTCTTTGAAACTCTCCCTTACAAAGTCAATCCTCTAACAGGCTACTTAGACTATGACAAGCTTGAAGAAAAAGCCTGCGATTATCGACCTAAACTGCTCATATGCGGAGGCAGTTCGTATCCCAGAGAATGGGATTATGCAAGGTTTAGGAAGATTGCTGATAAGTGTGGGGCTGTTTTGATGTGTGACATGGCTCATATTAGCGGCCTTGTGGCAGCTAAGGAAGTTGCTAGCCCTTTTGATTACTGTGATATTGTTACTTCAACCACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGGAAAGGTTCAAAACCCAGGAAGCAAGGCCTGGCTCTTAATCATGGGGATGATGGTAATTATGACTTGGAGGAAAAGATAAACTTCGCTTTATATCCATCCTTACAAGGAGGCCCGCACAATAATCACATTGCTGCTCTTGCCATAGCCTTAAAACAAGTTGCAAGTCCAGAGTACAAGGTATATATGCAACAGGTGAGGAAAAATGCACAGGCGTTAGCATCTGCTTTGCTGAAAAGAAAGTGCAGATTGGTAACTGATGGCACCGACAATCACTTGTTGCTCTGGGACCTCACCGCACTCGGCTTACTTGATAGAAACTATGAGAAGGTCTGTGAGGCTTGTAATATCACTCTCAACAAATGTGCCATTTATGGTTCTATTTCACCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACAACAAGAGGTTGCTTAGAGGATGATTTTGAGATCATAGCTGATTTTCTTCTGAAGGCAGCACAGATTACCAGCAATATACAGAAGGAGTATGGAAAATCTTGTAAAGATTTCCTCAAAGGTCTTCAAAATAATAAAGATATTGTTGAGCTCAGAAATCAGGTTGAGGCATTTGCTTCCGAGCTTCCAATGCCAGCATTTGATATTTGA 1782 0.4501 MDLSAAQSGLSLGLNGQISSPPLAGYVDDNLASFRQNSSFGSSSSTNPFVPLQLLEEKDDKVRVKSSEETEEEEEEEEEEEEEEGAVEDEAIDFMGRPVCAKRKLEGHPNFSSHPPKRLAVNWGLDARRASVQALANEPMEVADPEIHEIIGKEKRRQFSGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQFIDQMELLCCKRALAAFDLNPSKWGVNVQPYSCTSANFAVYTGILHPGDRMMGLDLLSGGHLSHGYYTPSGKKISAASIFFETLPYKVNPLTGYLDYDKLEEKACDYRPKLLICGGSSYPREWDYARFRKIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRKGSKPRKQGLALNHGDDGNYDLEEKINFALYPSLQGGPHNNHIAALAIALKQVASPEYKVYMQQVRKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLLDRNYEKVCEACNITLNKCAIYGSISPGGVRIGTPAMTTRGCLEDDFEIIADFLLKAAQITSNIQKEYGKSCKDFLKGLQNNKDIVELRNQVEAFASELPMPAFDI 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00424 593 Gene3D - 169 448 IPR015421 GO:0003824
Accr4g00424 593 MobiDBLite consensus disorder prediction 31 51 - -
Accr4g00424 593 Coils Coil 63 90 - -
Accr4g00424 593 MobiDBLite consensus disorder prediction 54 68 - -
Accr4g00424 593 Hamap Serine hydroxymethyltransferase [glyA]. 139 590 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Accr4g00424 593 SUPERFAMILY PLP-dependent transferases 127 591 IPR015424 -
Accr4g00424 593 FunFam Serine hydroxymethyltransferase 169 387 - -
Accr4g00424 593 MobiDBLite consensus disorder prediction 69 89 - -
Accr4g00424 593 CDD SHMT 144 582 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Accr4g00424 593 Gene3D Aspartate Aminotransferase, domain 1 144 589 IPR015422 GO:0003824
Accr4g00424 593 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 130 592 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Accr4g00424 593 MobiDBLite consensus disorder prediction 1 18 - -
Accr4g00424 593 MobiDBLite consensus disorder prediction 1 92 - -
Accr4g00424 593 Pfam Serine hydroxymethyltransferase 141 540 IPR039429 -
Accr4g00424 593 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 364 380 IPR019798 GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00424 Accr-Chr4 4093436 4097618 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00424 K00600 - gmx:100776419 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00424 4 4093436 4097618 Accr4g00424 4 4093436 4097618 ECH