Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00340 ATGGCCACTGTGCCTGCGCTCTCAAATTCGCACTTCTTTGCTATAAAGCCTCTTCCGAAAGCAACTCCATTGAATATCACCTTTATTGTACCATCTTCTGTTTCCTCCTGGCGTCGTCTGCCTCTATGTTGTGGCAGGCGCACACCCGTTGTTGCGTCTGTGAAGGAGAATATCGGCCGCATTCAAAAAACAATCAACGATTTCGCGAGCTTGAACTACTGGGTTGTTCGCGATTATTATCGTCTGGTGGACTCCGTCAATGCCTTTGAACCGAAGATACAGAGGCTATCCGACGAGCAGTTGACTGCGAAAACTCAGGAGTTTCGGCTTCGGCTTAAGCGAGGGGATTCGCTTGCTGATATTCAAGCTGAGGCATTTGCTGTTGTTCGCGAAGCTGCAAGAAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAAACGGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCTTATCTTAATGCCTTGACTGGTGAGGGTGTCCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGTCGAATTCATCGATTCTTGGGTCTTTCCGTGGGCCTTATTCAGAGGGGGATGACTGCTGGAGAGCGGAGATCCAATTATAGATGTGATATAACATATACCAACAACTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGGAGAGCTTGTGATGAGATGGCCAAAACCATTTCATTTTGCAATTGTCGATGAAGTGGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGTGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCTGAATTGCTTATACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTTGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAATGACCCCTGGGCTAGATTTGTGATGAATGCTTTGAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCCTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTAGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATCGAAGTGCCCACCAATCTCCCCAACATTCGGAAAGATTTGCCCATCCAAGCTTTTGCTACTGCTCGGGGGAAATGGGAGCAGGTTCGCCGAGAAGTTGATTATATGTTTAGACAAGGTCGTCCAGTCTTAGTTGGGACAACCAGCGTAGAAAATTCTGAACTTCTATCTGGTCTGCTTAAGGAATCGAATATTCCCCATAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGGTTGTTGCACAGGCAGGGCGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGTGGAAATCCAAAAATGCTAGCCAGGGAAATTATAGAGGATAGCTCACTTTCATTTTTGACTCCAGAGGCTTCTAATATTGAACTTGTTGGGGAGACAATTTCACAGAAGGTGCTTCCAAAGATAAAGGTTGGATCATCGTCACTGGCTTTATTGGCTAAGACGGCCTTAATGGCTAAATATGTATCCAAAAGCGAAGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTCATCTCAGAGGCTATTGAAATGAGTCAGTCATATAATTTGAATGAGTTGGAAAAGCTTGCAAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACAGTAGCACTTGCCTATTTGTCAGTATTGGAGGATTGTGAAAAGCACTGTTTGAATGAAGGGTCTGAGGTGAAAAGACTTGGGGGCCTTCATGTAATTGGTACATCTTTGCATGAGTCCCGACGAATCGACAACCAGCTCCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCGGTGAGACTTATATCAAAGATTACTAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTGTTAGCCCTGCAAATTAACGCAGAGAAGTACTTCTTTAGCGTGAGAAAGAGCCTAGTAGAGTTTGATGAAGTGTTAGAGGTCCAACGAAAGCATGTTTATGACCTTAGACAGTTAATTCTAACCGGAGATGATGAAAGTTGTTCCCAACACATATACCAGTACATGCAAGCTGTGGTGGATGAGATTGTCTTCAGTAACGTTGATCTGCAAAAGCATCCAGGGAGTTGGAATTTGAGTAAACTTGTTAAGGAGTTTATGGCAATTGGTGGAAAGCTGTTGCATGAATCTTTTGCAGGGATTACCAGAGACACTTTGCTGAAGTCACTTGAGCAATTGCATGCTGTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTGCCAGCACCTCCAAATACCTTCCGGGGAATTCGCCGGAAGGGCTCTTCATTAAGACGTTGGCTTATTATATGCTCTGATGATTCAATCAAGGATGGACATTTTCGAACAGTCACTAATCTTCTTCGCAAGTACCTTGGAGATTTTTTGATTGCTTCATATCTAAATGTTGTTGAAGAGTCAGGTTATGACGAGAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTGTGAAAACATTGGATAGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGTTCGGCGGTAAATGTAAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCCATGCTTAGTGCAACTCGAAGGTTAACTGTGGAGTCACTGCTGCAATATTGGGCATCTCCCATGGAAACCGAAGAACTATTTGATTTCTAG 3156 0.4309 MATVPALSNSHFFAIKPLPKATPLNITFIVPSSVSSWRRLPLCCGRRTPVVASVKENIGRIQKTINDFASLNYWVVRDYYRLVDSVNAFEPKIQRLSDEQLTAKTQEFRLRLKRGDSLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAGERRSNYRCDITYTNNSELGFDYLRDNLAGSSGELVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVDYMFRQGRPVLVGTTSVENSELLSGLLKESNIPHNVLNARPKYAAREAEVVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSSLSFLTPEASNIELVGETISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFISEAIEMSQSYNLNELEKLANEESEMYPLGPTVALAYLSVLEDCEKHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLALQINAEKYFFSVRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIYQYMQAVVDEIVFSNVDLQKHPGSWNLSKLVKEFMAIGGKLLHESFAGITRDTLLKSLEQLHAVGSIDIVNFSLPNLPAPPNTFRGIRRKGSSLRRWLIICSDDSIKDGHFRTVTNLLRKYLGDFLIASYLNVVEESGYDERHVKEIERAVLVKTLDSFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMETEELFDF 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00340 1051 Pfam SecA preprotein cross-linking domain 296 400 IPR011130 GO:0016020|GO:0017038
Accr4g00340 1051 FunFam Protein translocase subunit SecA 909 1038 - -
Accr4g00340 1051 Gene3D Helical scaffold and wing domains of SecA 768 884 - -
Accr4g00340 1051 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Accr4g00340 1051 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 CDD SF2_C_secA 462 733 IPR044722 -
Accr4g00340 1051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Accr4g00340 1051 FunFam Protein translocase subunit SecA 768 887 - -
Accr4g00340 1051 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Accr4g00340 1051 ProSiteProfiles SecA family profile. 61 765 IPR014018 -
Accr4g00340 1051 Pfam SecA DEAD-like domain 75 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Accr4g00340 1051 SUPERFAMILY Helical scaffold and wing domains of SecA 942 1047 IPR036266 -
Accr4g00340 1051 Gene3D - 80 457 IPR027417 -
Accr4g00340 1051 Pfam SecA Wing and Scaffold domain 763 1038 IPR011116 GO:0016020|GO:0017038
Accr4g00340 1051 SUPERFAMILY Helical scaffold and wing domains of SecA 769 870 IPR036266 -
Accr4g00340 1051 Gene3D Helical scaffold and wing domains of SecA 915 1038 - -
Accr4g00340 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 457 IPR027417 -
Accr4g00340 1051 Gene3D - 459 765 IPR027417 -
Accr4g00340 1051 Gene3D - 290 410 - -
Accr4g00340 1051 FunFam Preprotein translocase SecA subunit 290 410 - -
Accr4g00340 1051 CDD DEXDc_SecA 100 456 - -
Accr4g00340 1051 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 50 1048 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 746 IPR027417 -
Accr4g00340 1051 Hamap Protein translocase subunit SecA [secA]. 60 1041 IPR000185 GO:0005524|GO:0006605|GO:0006886
Accr4g00340 1051 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Accr4g00340 1051 ProSitePatterns SecA family signature. 544 559 IPR020937 GO:0006605|GO:0006886|GO:0016020
Accr4g00340 1051 FunFam Protein translocase subunit SecA 79 300 - -
Accr4g00340 1051 NCBIfam preprotein translocase subunit SecA 86 858 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00340 Accr-Chr4 3284523 3304475 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00340 K03070 - qsa:O6P43_019787 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00340 4 3284523 3304475 Accr4g00340 4 3284523 3304475 ECH