Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr4g00293 | ATGCGTTCCCGAGGCATGGATCTCGACGAGGATGAGTATGGGGAGGAAAACGACGATGACCTAGCGGTCGATGACGACGAAGCGGAAGTGGAGGTGGAGGTGGAGGAGGCCGACAGAGGCGCCTCCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTCGACGAGGACGAAGACGAGGAGGAGGATGATGAGGATGATTTTGATGCAAGAGGCGGACGAAAGCGCCAATACAAGAGACGTGATGCTTCCAATTTCTTCGATGAAGAGGCACAGGTGGACAGCGATGAGGACGAGGAAGAGGAAGAAGGCGAGGACGATTTCATCGTCGAAGAAGGAACTGATCTACCAGATGAAGATGGTGGAATGAGGATGCTTAGCCGCCGTATGCTGCCCCATGATCAAGAAGAACATGAAGACCTTGAAGCTATGGCAAGGAGCATTCAAGAGAGATATGGAAGGCGTGTTACGGATTATGATGAAGAAGCTACAGACGTAGAGCAGCAAGCACTCCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTTAAATGTGCGATTGGTCGTGAGCGCGAGGCGGCTGTTTGCCTTATGCAAAAATATATTGATAAAGGGTCTGAACTGCAAATAAGGTCTGCTGTTGCTCTAGATCATCTCAAAAATTATATATATGTCGAAGCTGATAAAGAAGCCCATGTGAGAGAGGCATGTAAAGGTCTACGCTCCATATTTGCCCAGAAGATAACACTTGTTCCAATCAGAGAGATGACTGATGTTCTTTCAGTTGAAAGCAAAGCTATTGATCTCTCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCAAAAGTTGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAATTGATTCCGAGGATAGACTTGCAAGCTCTTGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGACGAAGCTAGGGAACTACATATCCGTGTAGAGCATAGACGTGACCCCATGACTGGGGAACGCTTTGAAACCATTGGAGGCATGATGTTCAAAGACGGTTTCTTGTACAAAACAGTATCAATAAAGTCAATCAGCGCTCAAAATATCAAACCTACGTTTGATGAACTTGAAAAATTTCGAAAACCGGGTGAGAATGGAGATGGGGATGTAGCTAGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTAATTGTTATCAAGGGAGATCTAAAGAATTTGAAGGGGTGGGTAGAGAAAGTTGATGAGGATAATGTTCATATAAGGCCAGAAATCAAGGGCCTTCCAAAAACTCTTGCTGTAAATGAAAGGGAACTTTGTAAATACTTTGAACCTGGGAACCATGTTAAAGTTGTTTCTGGCACACAAGAAGGGGCAACTGGTATGGTGGTGAAGGTGGAGCAGCATGTTCTGATCATTTTATCTGATACAACAAAGGAACATATTCGTGTATTTGCTGATGATGTTGTGGAGAGTTCTGAAGTCACCACAGGAGTTACAAGAATTGGGGACTATGAGCTCCATGATCTTGTCCTGCTAGATAATTTGAGCTTTGGTGTGATAATACGCGTAGAAAGTGAGGCCTTTCAGGTTCTCAAGGGAGTTCCTGACAGACCTGAAGTTGCACTGGTGAAATTAAGGGAAATCAAGTGCAAGATTGACAAAAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTACGCATAGTTGAGGGTCCATGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGGGGAGTCTTGTTCATCTATGATCGACATCATCTTGAACATGCTGGCTTTATATGTTCAAAAGCTCAATCATGTGTGGTTGTGGGGGGTTCACGGTCCCATGGCGATAGAAATGGTGATGCCTACTCAAGATTTCCCAGCCTTAGAACTCCACCTCGAATCCCACAATCTCCTAGGAAGTTTTCTCGAGGAGGGCCACCAATTAATTCTGGAGGAAGGCATAGAGGTGGAAGAGGGCATGATGGATTGGCTGGCGCAACAGTTAAAATTCGCCAAGGTCCCTATAAAGGTTATCGTGGGCGTGTTATAGAAGTTAACGGCACATCAGTTCGGGTTGAACTGGAATCCCAAATGAAAGTTGTGACAGTTGATCGTAATCATATTTCTGATAATGTGACTGTAACCCCGTATCGTGAGTCATCGCGGTATGGAATGGGAAGTGAGACCCCAATGCACCCCTCTCGAACTCCTTTACATCCTTATATGACTCCTATGAGAGATCCTGGAGCAACCCCTATTCATGATGGTATGAGAACTCCCATGCGAGATAGGGCGTGGAATCCTTACACTCCCATGAGTCCTCTAAGGGATAATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCACAATACCAGCCAGGGAGTCCTCCTTCACGAATGTATGAAGCTCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCTGGTGGCAATTACAGCGAAGCTGGGACACCTAGGGACAATTCTGCCTATGGTAATGCTCCAAGCCCATATTTACCATCAACACCAGGTGGACAGCCTACGACACCAAACTCAGCATCTTATCTTCCCGGCACCCCTGGAGGGCAGCCTATGACTCCAGGAACTGGTGGTCTGGATATGATGTCCCCGGTTATAGGTGCAGACAGTGAAGGACCGTGGTTTGTGCCAGATATATTGGTCAATGTGCGCCGAGCTGGAGAGGAATCTATTGTGGGAATAATAAGGGAGGTGCTTCCGGACGGATCTTGCAGGGTAGCCCTGGGATCAAGTGGAAATGGTGAAACAATAACAGCTCTTCCCAGTGAAATGGAGGCTGTAGTACCGAGGAAATCAGACAAGATAAAGATTATGGGTGGGGCTCTCCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGTATTGTAAAGGTAGATGATACACTGGATGTGAAGATTTTAGACTTAGTCATTCTAGCTAAACTAGCTCAATCGTGA | 3126 | 0.4584 | MRSRGMDLDEDEYGEENDDDLAVDDDEAEVEVEVEEADRGASRKRRRSGFIDDDAEEVDEDEDEEEDDEDDFDARGGRKRQYKRRDASNFFDEEAQVDSDEDEEEEEGEDDFIVEEGTDLPDEDGGMRMLSRRMLPHDQEEHEDLEAMARSIQERYGRRVTDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAVALDHLKNYIYVEADKEAHVREACKGLRSIFAQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCVVVGGSRSHGDRNGDAYSRFPSLRTPPRIPQSPRKFSRGGPPINSGGRHRGGRGHDGLAGATVKIRQGPYKGYRGRVIEVNGTSVRVELESQMKVVTVDRNHISDNVTVTPYRESSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPLRDNNWEDGNPGSWGTSPQYQPGSPPSRMYEAPTPGAGWASTPGGNYSEAGTPRDNSAYGNAPSPYLPSTPGGQPTTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGADSEGPWFVPDILVNVRRAGEESIVGIIREVLPDGSCRVALGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr4g00293 | 1041 | Gene3D | - | 163 | 265 | IPR036735 | GO:0006355 | |
| Accr4g00293 | 1041 | PIRSF | Spt5 | 2 | 1041 | IPR017071 | GO:0006357|GO:0032784 | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_3 | 476 | 526 | IPR041976 | - | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_2 | 425 | 475 | IPR041975 | - | |
| Accr4g00293 | 1041 | SUPERFAMILY | Translation proteins SH3-like domain | 468 | 527 | IPR008991 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 706 | 733 | IPR005824 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 476 | 503 | IPR005824 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 424 | 451 | IPR005824 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 600 | 627 | IPR005824 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 272 | 299 | IPR005824 | - | |
| Accr4g00293 | 1041 | SMART | kow_9 | 988 | 1015 | IPR005824 | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 828 | 843 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
| Accr4g00293 | 1041 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 183 | 264 | IPR005100 | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 892 | 906 | - | - | |
| Accr4g00293 | 1041 | Gene3D | - | 419 | 476 | IPR014722 | - | |
| Accr4g00293 | 1041 | PANTHER | SUPPRESSOR OF TY 5 | 76 | 1018 | IPR039659 | GO:0006357|GO:0032784 | |
| Accr4g00293 | 1041 | FunFam | Transcription elongation factor SPT5 | 479 | 528 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 803 | 918 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
| Accr4g00293 | 1041 | SMART | nusgn_4 | 181 | 267 | IPR006645 | GO:0140673 | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 764 | 783 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 126 | - | - | |
| Accr4g00293 | 1041 | FunFam | Transcription elongation factor SPT5 | 272 | 314 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
| Accr4g00293 | 1041 | FunFam | Transcription elongation factor SPT5 | 693 | 756 | - | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 54 | 71 | - | - | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_4 | 604 | 646 | IPR041977 | - | |
| Accr4g00293 | 1041 | Gene3D | - | 272 | 314 | IPR014722 | - | |
| Accr4g00293 | 1041 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 90 | 177 | IPR022581 | - | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_1 | 276 | 313 | IPR041973 | - | |
| Accr4g00293 | 1041 | FunFam | Transcription elongation factor SPT5 | 163 | 265 | - | - | |
| Accr4g00293 | 1041 | FunFam | Transcription elongation factor SPT5 | 419 | 476 | - | - | |
| Accr4g00293 | 1041 | Gene3D | - | 479 | 528 | IPR014722 | - | |
| Accr4g00293 | 1041 | ProSitePatterns | Ribosomal protein L24 signature. | 428 | 445 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 864 | 883 | - | - | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_6 | 982 | 1039 | IPR041980 | - | |
| Accr4g00293 | 1041 | Gene3D | - | 693 | 756 | IPR014722 | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 661 | 709 | - | - | |
| Accr4g00293 | 1041 | SUPERFAMILY | Translation proteins SH3-like domain | 417 | 455 | IPR008991 | - | |
| Accr4g00293 | 1041 | CDD | NGN_Euk | 183 | 265 | IPR039385 | - | |
| Accr4g00293 | 1041 | Pfam | KOW motif | 710 | 740 | IPR005824 | - | |
| Accr4g00293 | 1041 | Pfam | KOW motif | 479 | 506 | IPR005824 | - | |
| Accr4g00293 | 1041 | CDD | KOW_Spt5_5 | 708 | 754 | IPR041978 | - | |
| Accr4g00293 | 1041 | MobiDBLite | consensus disorder prediction | 93 | 120 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr4g00293 | Accr-Chr4 | 2845947 | 2852808 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr4g00293 | K15172 | - | gmx:100801380 | 1731.46 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Accr4g00293 | 4 | 2845947 | 2852808 | Accr4g00293 | 4 | 2845947 | 2852808 | ECH |