Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00245 ATGGGCTGCTCTTGTTCAAAGAAGGCCAAGTCAGCAGGTTATGAGGATCCCACTGTTCTTGCTTCTGAGACACCCTTCTCTGTGAGTGAAGTGGAGGCGCTACATGAGCTCTATAAGGAGTTGAGCAACTCCATTATTGAAGATGGTCTTATTCACAAGGAAGAATTCCTGCTGGCACTCTTCAGGAATAAAAGCAAGAGAAATCTGTTTGCAGACAGGGTTTTTGACTTATTTGATGTCAAGCGTAATGGAGTTATTGAATTTGGGGAATTTATTCAATCATTGGCTGTTTTTCACCCAAATGCACCTATAGAAGACAAGGTCACTTTTGCTTTTAGGTTGTATGATCTGAATCAGACGGGATATATTGAACGAGAGGAGCTAAAAGAGATGTTATTGGCGCTTCTTCATGAGTCAGATCTTGTACTTTCGGATGATATTATCGAAACCATAGTGGATAAGACATTTAGTGATGCTGATATAAAAGGTGATGGAAGGATTGATCAAGAGGAGTGGAAAGCATTTGTGTCAAAACATCCAAATTTGATGAACAACATGACCCTTCCCTACTTAATGGATATAACCTTAGCATTTCCAAGTTTTGTGGAGAGAACAGAAGTTGAAGACTCAGCTATATGA 639 0.3975 MGCSCSKKAKSAGYEDPTVLASETPFSVSEVEALHELYKELSNSIIEDGLIHKEEFLLALFRNKSKRNLFADRVFDLFDVKRNGVIEFGEFIQSLAVFHPNAPIEDKVTFAFRLYDLNQTGYIEREELKEMLLALLHESDLVLSDDIIETIVDKTFSDADIKGDGRIDQEEWKAFVSKHPNLMNNMTLPYLMDITLAFPSFVERTEVEDSAI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00245 212 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Accr4g00245 212 Pfam EF-hand domain pair 106 175 IPR002048 GO:0005509
Accr4g00245 212 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Accr4g00245 212 PANTHER CALCINEURIN B 2 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Accr4g00245 212 Gene3D - 16 210 - -
Accr4g00245 212 PRINTS Recoverin family signature 121 139 - -
Accr4g00245 212 PRINTS Recoverin family signature 74 95 - -
Accr4g00245 212 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Accr4g00245 212 Pfam EF hand 72 93 IPR002048 GO:0005509
Accr4g00245 212 FunFam calcineurin B-like protein 3 16 209 - -
Accr4g00245 212 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Accr4g00245 212 SMART efh_1 70 98 IPR002048 GO:0005509
Accr4g00245 212 SMART efh_1 107 135 IPR002048 GO:0005509
Accr4g00245 212 SMART efh_1 151 179 IPR002048 GO:0005509
Accr4g00245 212 SUPERFAMILY EF-hand 19 201 IPR011992 -
Accr4g00245 212 CDD EFh 107 177 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00245 Accr-Chr4 2379802 2381556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00245 1 211 EF-hand Containing Proteins AT4G17615 61.792 4.28e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00245 K06268 - gmx:100811649 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00245 4 2379802 2381556 Accr4g00245 4 2379802 2381556 ECH