Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00229 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGAGTATGACTCAGAGACCTTGGCTAGGACCAGACCTCGGTATAATCACCACTACCCAAGTACTACCCACCGTCATCGGGGTGGCGGCAGTGGTGCTCGACCTAAGGCGCAAGACTCATCTTTAACGGTGACCACAAGTTACCGCATTTTGTGCCACGATATCAAGGCTGGTGGAGTAATTGGCAAGTCAGGTAGCATCATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCTGGCGATGAGGAGCGAATCATAGAGATTTCTGACACGCGCCGGCGTGACCCAGAAGGCCGAATGCCATCGTTCTCGCCGGCGCAAGAGGCCTTGTTGTTGATTCACGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAGGAGGATTATGGGGGCAGGGGAGGTGGTAGCAGCAGCCGAGTAGCCACTAGACTGGTGGTGTCCAGAATGCATGTGGGGTGCTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATTGAAACCAAGACACAGATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCCGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTACTTATATCATCACGCTTGAGGGAAAGCCAACATCGTGACCGCAGTCATTTTCATGGACGAGCACATTCGCCAGAGCGTTTTTTCCCTCCAGATGATGATTATATACCTCACGGGGCAGCTCGTAGATCCTCTATGGATGGGGCAACTTTTGGATCACGAATATCTACTGCCAATATAAGAAGCAATAGCTATCAGTCATTAGGTTATACAGTGGAACCTGGGGCTCCTCCTATAGCTGACGATGCACAACTCCTTTATGGTGAAGACCTCATTTTCCGGATTCTTTGTCCACTGGACAAAGTGGACCGTATTATAGGGGAATCAGAAGGATTTGTATATTTCCTTCAGACTGAAGTTGGTGTCGATGTTAAGGTAGATGATCACGTGGTTGGTTCAGATGAGCAGATAATCATAATTTCTTCGGATGAGGGTCCTGATGATGAGCTGTTCCCGGCTCAGGAAGCTTTGTTGCATATTCAAACACGCATTGCTGATCTTGAGCTAGATGATGACAACATTATAACCACCAGGCTTGTTGTTCCATCTAGTGACATTGATTGTTTAGATGGAAGAGATGTATCACCATTAGAGATAAGTAGACTGACTGGCACAAATATTCAAATTCTCCCCAGAGAGCAGTTACCTCCCTGTGTTGCAAAAAATGATGAGCTGGTCCAGATTGTAGGTGAGATCAAAGCAGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGAGATTTCTTTCAAAGGGACGCAGCACCATCATCTGCCTCAGTACCTAATACGGAGATATCTTCTTCCAGTAACTTAGCTCTAGTTCATGAGGCTTACACTGGCACTGAAACTCCCATAACCTATCAGAATGTGCAACCTGTGGCTGCTGCACTTCCCTTAAAAGAAACGGGAGGATCTAGCACAGAGACAGGAAAGCAGAAAGAAGGTGATCGCCGTGATGATGTGATGAGTAGTTTGAATAGGATCCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTGGTCATACCGGAGTACGCAGTTCCAAAGCTTACAGCAAAGTCCAAAAGCAAACTTGCTCAGATAAGTGAGTTGTCAGGAGCCACTGTAACACTTGTAGAGGATAGGCCGGAGGAGACACAAAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAAGGATTCATTTTGAGCACACAAGAAGATGGACCCTAA 1944 0.4624 MERSRSKRNYYYDQEYDSETLARTRPRYNHHYPSTTHRHRGGGSGARPKAQDSSLTVTTSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERFFPPDDDYIPHGAARRSSMDGATFGSRISTANIRSNSYQSLGYTVEPGAPPIADDAQLLYGEDLIFRILCPLDKVDRIIGESEGFVYFLQTEVGVDVKVDDHVVGSDEQIIIISSDEGPDDELFPAQEALLHIQTRIADLELDDDNIITTRLVVPSSDIDCLDGRDVSPLEISRLTGTNIQILPREQLPPCVAKNDELVQIVGEIKAAREAILEVTSRLKNYLYRDFFQRDAAPSSASVPNTEISSSSNLALVHEAYTGTETPITYQNVQPVAAALPLKETGGSSTETGKQKEGDRRDDVMSSLNRIPVPLVTRSTLEVVIPEYAVPKLTAKSKSKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSTQEDGP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00229 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 397 484 IPR036612 GO:0003723
Accr4g00229 647 Pfam KH domain 61 109 IPR004088 GO:0003723
Accr4g00229 647 Pfam KH domain 573 636 IPR004088 GO:0003723
Accr4g00229 647 Pfam KH domain 166 234 IPR004088 GO:0003723
Accr4g00229 647 Gene3D K Homology domain, type 1 570 642 IPR036612 GO:0003723
Accr4g00229 647 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Accr4g00229 647 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 265 - -
Accr4g00229 647 MobiDBLite consensus disorder prediction 22 53 - -
Accr4g00229 647 CDD KH-I_PEPPER_rpt2_like 166 238 - -
Accr4g00229 647 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Accr4g00229 647 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Accr4g00229 647 MobiDBLite consensus disorder prediction 534 557 - -
Accr4g00229 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 318 376 IPR036612 GO:0003723
Accr4g00229 647 ProSiteProfiles Type-1 KH domain profile. 571 635 - -
Accr4g00229 647 Gene3D - 320 480 - -
Accr4g00229 647 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Accr4g00229 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 643 IPR036612 GO:0003723
Accr4g00229 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 109 IPR036612 GO:0003723
Accr4g00229 647 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Accr4g00229 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Accr4g00229 647 SMART kh_6 319 392 IPR004087 GO:0003676
Accr4g00229 647 SMART kh_6 570 640 IPR004087 GO:0003676
Accr4g00229 647 SMART kh_6 57 138 IPR004087 GO:0003676
Accr4g00229 647 SMART kh_6 162 238 IPR004087 GO:0003676
Accr4g00229 647 Gene3D K Homology domain, type 1 160 242 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00229 Accr-Chr4 2299507 2304719 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00229 K21444 - gmx:100804167 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00229 4 2299507 2304719 Accr4g00229 4 2299507 2304719 ECH