Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00182 ATGGATAACTCCACTCAAGAATCTCGCCTGCGATCCGAACACTCCGTTACCTATGATTCTCCTCATCCAATCTACGCCATGGCCTTCTCTTCCACCCCTTCTCTTGCTTCTCCACTCCAACGAATCGCAGTTGGTAGCTTCATTGAAGATTACAATAACCGCGTCGATATTATCTCCTTCAACGCTGACTCTTCCTCCGTTCGACACCAACCTTCCCTCTCTTTCGACCACCCCTACCCGCCCACTAAACTTATGTTCCAGCCTAACGCCCACTCTTCTCTTCGAAAGTCCTCCTCCGACCTCCTCGCCACCTCCGGTGACTATCTTCGCCTCTGGGAGGTTCGGGAGAATTCCGTTGACGCAATTTCACTTCTTAACAATAGCAAGACCAGTGAGTTCTGTGCCCCTTTGACCTCCTTCGATTGGAACGACATCGAACCCAAGAGAATCGGGACTTCCAGCATCGACACTACTTGTACGATTTGGGATATCGAAAAGGGGGTTGTCGAAACGCAGTTAATTGCGCACGATAAGGAGGTTTATGACATTGCTTGGGGCGAGGCTCGAGTATTTGCGTCTGTTTCGGCGGATGGTTCTGTTAGAATCTTCGATCTGAGGGACAAGGAGCACTCCACGATTATATACGAGAGTCCGCAGCCAGATACGCCTCTGCTCAGGTTGGCTTGGAATAAGCAGGACCTAAGGTACATGGCCACTATACTGATGGATAGCAATAAGATTGTGATATTGGATATTAGATCACCGACCATGCCGGTGGCGGAGTTGGAGAGGCATCGTGCTTGCGTGAATGCCATTGCTTGGGCTCCCCAAAGTAGTAGGCATATTTGTTCGGCGGGGGATGATTCGCAGGCCCTTATTTGGGAATTGCCTACTGTGGCTGGACCCAATGGAATTGATCCTATCTCTATGTATTCTGCTGGCTCTGAAATTAATCAACTGCAATGGTCTGCTGCTCAGCCTGACTGGATTGCTATTGCTTTTGCGAACAAGATGCAGCTTTTGAAGGTTTGA 1032 0.4942 MDNSTQESRLRSEHSVTYDSPHPIYAMAFSSTPSLASPLQRIAVGSFIEDYNNRVDIISFNADSSSVRHQPSLSFDHPYPPTKLMFQPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDAISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHRACVNAIAWAPQSSRHICSAGDDSQALIWELPTVAGPNGIDPISMYSAGSEINQLQWSAAQPDWIAIAFANKMQLLKV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00182 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Accr4g00182 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Accr4g00182 343 SMART WD40_4 126 163 IPR001680 GO:0005515
Accr4g00182 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Accr4g00182 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Accr4g00182 343 PANTHER WD REPEAT CONTAINING PROTEIN 5 343 IPR045159 -
Accr4g00182 343 Gene3D - 49 342 IPR015943 GO:0005515
Accr4g00182 343 SUPERFAMILY WD40 repeat-like 20 302 IPR036322 GO:0005515
Accr4g00182 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Accr4g00182 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Accr4g00182 343 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
Accr4g00182 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Accr4g00182 343 FunFam WD repeat-containing protein LWD1 11 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00182 Accr-Chr4 1815297 1816328 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00182 K11805 - tcc:18605867 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00182 4 1815297 1816328 Accr4g00182 4 1815297 1816328 ECH