Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g02193 ATGGATCCAATCGGAGCATGGCAGGAGCTTGGTTTTCGGGTCGGGTTCACGGGCCACAGTGGACACCTACGAGTGGAGCCGCTGACGACAGTGGAGCGTTCCAATCCATTGAGCTCACTTCCTGATTTCATCCTGCCACCTGCATTTCCGGAGGAGACGCCTGAATCCATAAAGAAGTACATTGAAGAGACATATCTCACCCCAAGATTGGACCCTGATGACTTTTCACCCGAGAAAGTTGGGAGGCAGTGGGAATTTGACTGGTTTGACCGGGCAGAAGTGCCTCTGGAGCCATCTTTGCCTCGGACTGTTTTGGTTCCTGTTTGGGAACCACCATTTCGACGGCAAAACAATGTTTCAGATCAAGGAAAATGGGAGCCAAAATCTGAGGAGGTGGATGTGTCAGAATTGATGCTAGGAGACGAAGAGTCTGGGCGATTACCACGTGCTTCTGGATCTGCTAAGGACTTTGTAAGGGGAAGCATCAATAGTCGCCCCTTTCGTCCTGGAGGCTTGGATAACTCCCAAACTTTGAACAGAGTTCTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAATTTTGAATGGTGGCCCTCCTCAGACGATTCCTCCAGGCTTTAAACAAGGGTTGGACCTTGGAGCATTTAAGCCATATCCTTGCTCATGGAATGTTTACAAGGATGCCAGTTCACTCAAGAGCTCGTCAGATGAAAAACTGAGTGAGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGATGATGTTACTCATGAACAAGAGGAAGATGTCCATTTATCAGAAGTGGAGTCTGTTGCGCTGGAAGCTGAAGTTGATAAGGTGGAGGCATCTGGCAGTATGCATGAGGATGAATTCTCACTAGATGAAGTCTTGTCAACTAAATTGGAAGGATTAAAACCACTTTTAGATGCATCTGGTGCTGGTGGACGGCAGCAAAAGGAGGCTTGGGCACGTCGTGGAGGTAGCAAAGAAATCTTAGATCGCTTTTATGAGCTTGTTCCTGATATGGCACTTCAATTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGCTATATATTATCTTGAGAAAGGGGAATCTGTTTTTGTTGCTGCTCACACATCAGCTGGAAAGACAGTAGTGGCAGAATATGCATTTGCTTTAGCATCAAAGCATTGCACTAGGGCTGTGTATACTGCTCCAATAAAAACTATCAGCAATCAGAAATATAGGGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTTACTGGTGATGTAACCCTGAGGCCAGAGGCTTCTTGTCTCATCATGACTACGGAAATTTTAAGGTCCATGCTCTATCGAGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGACGAAGTGCATTATGTCAATGATGCTGAAAGAGGTGTTGTTTGGGAAGAAGTGATTATAATGCTTCCAAGACACATCAATATCATCCTCCTTTCAGCCACGGTACCTAACACGGTTGAATTTGCTGATTGGATTGGTCGGACAAAACAAAAGGAGATCCGGGTTACTGGGACAACAAAAAGACCTGTTCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATATGTGAAAGTGAAACATTTCTGCCTCAGGGACTGAAAGCTGCTAAGGATGCATTTAAGAAAAAAAATTCAACTGCTGTTGGTGGTGGTTCTGGTCGATATTCGGGGACATCAGCAGGTCATGATGGTACTCAAGTTCAAAAACATGAAAATGCAGCACGACTTAAACATGGAAGTAGTTTCTCCAAAACTTCTAGAGGCTATCAGAATAATGGAAATGGCCAGAACAACTGGGAACTCAGGAGGGCAGAAGCTTCTATGTGGTTGAAGCTTATTAACAAGCTCTCCAAAATGTCACTGTTGCCTGTGATCATATTCTGTTTTTCTAAGAATCGCTGTGATATATCAGCTGATAAAATGACTGGAACTGACCTAACTAGTAACTCAGAGAAAAGTGAAATCCGTGTTTTCTGCGATAAATCATTTTCAAGGCTGAAAGGATCTGACAGGAATTTACCTCAGGTTGTTCGAGTCCAGAATCTTCTTCGTAGAGGGATTGGTGTGCATCATGCCGGCCTTCTTCCAATAGTAAAGGAAGTAGTTGAAATGCTATTCTGCCGTGGTGTTATCAAGGTTTTGTTTTCAACAGAGACATTTGCAATGGGTGTTAATGCTCCTGCTAGAACAGTAGTCTTTGATACTTTAAGGAAATTTGATGGCAAGGAATTTAGGCAGTTACTACCAGGAGAATATACTCAAATGGCTGGTCGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTGTTCTAATGTGCCGTGATGAAATCCCTGAAGAAAGGGATTTGAAGCATGTTATTGTTGGAAATGCAACCCGCCTTCAATCTCAATTTCGGCTTACCTATATTATGATCCTCCATCTCCTTCGAGTTGAAGAATTAAAGGTAGAAGATATGCTTAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCTGAAATGAAAGAACTTTTGATGCGAAAGCTTAATCAACCTACAAAAGCTATTGAATGCATAAAGGGTGAGCCAACCATCGAGGAATACTATGAGACATACTTAGAAGCTGAGAAGTACAGTAGCAAAATATCAGATGCAATTTTGCAGTCCTCTAATGCCCAACAATTTCTTGCTCCTGGAAGAGTAATAGTAGTAAAATCAGAAACAGTCAATGATCACCTGCTTGGTGTAATTGTGAAAGCTCCTTCTGCAAATTGTAAGCAATATATTGTTTTAGTGCTCAGGCCTGATTTGCCGTCCCCAGGGGAAAATGCCCCAAGTAGGGGTAGTGTGCAAGATAAACCCAGTGACTTCAACCAGGGTTTTTTTGTGGTGCCTAAATCAAAACGTGGTTTTGGAGATGATTATCATACCTCTGTTTCAGCTCGTAGAGGAACAGGTGTTATCAACATCACACTACCACATCGTGGTTATGTTAGTGGAATGAGTTATGAGGTTCGAGGAGTTGATAGGAAGGAATTTCAATGCATTTGCAAAAGCAAAATCAAAATTGACCAAGTTGGACTTCTTGAAGATGTTAGCAATGCTGTTTACTCCAAGACAGTTCAGATGCTCCTGGATTTAAAATCAGATGGAAACAAGTACCCTCCGCCCCTGGATCCTGTGAAAGATCTAAAGTTGAAAGATGTTGAACTTGTGGACACATACCGCAAATGGACTAAATTATTGGAGAAGATGACCCAGAATCCGTGCCATGGGTGTATAAAATTGGAAGAGCACATGAAGCTAGCGGAAGACATACAAAAGCACAAACAAGAGGTCACTGATCTTCAATATAGGATTTCAGACGAAGCACTTCAACAGATGCCAGACTTTCAGGGCCGGATTGATGTTCTGAAGGAAATTGGTTGCATAGATGATGATTTTGTTGTACAAATGAAAGGACGTGTTGCCTGTGAGATGAACTCTGGCGAGGAATTGATTTGCACTGAATGCTTGTTTGAGAATCAACTGGATGAACTGGAACCGGAAGAAGCTGTGGCATTAATGTCTGCCTTTGTGTTCCAGCAGAAAAACACTTCTGAACCTTCACTCACAACCAAGCTGTCTGAGGCAACACATAAGTTGTACAATACGGCTATAGAACTTGGACAACTTCAAGTGCAGAAAGGACTATCAATAGATCCTGAAGAATATGCCCAAGAAAATCTCAAGTTTGGTCTAGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCATTTGCAGACATCTGTGAGCTCACTGATGTTCCTGAAGGCTTGATAGTGAGGACCATTGTGAGACTAGATGAGACATGTCGAGAGTTTAAGAATGCTGCAGCGATTATGGGTAATTCTGCTCTCTGCAAGAAAATGGAGGTTGCTTCTAATGCAATTAAGCGTGACATTGTTTTTGCAGCTAGCCTGTACATTACTGGTGTATGA 4032 0.4256 MDPIGAWQELGFRVGFTGHSGHLRVEPLTTVERSNPLSSLPDFILPPAFPEETPESIKKYIEETYLTPRLDPDDFSPEKVGRQWEFDWFDRAEVPLEPSLPRTVLVPVWEPPFRRQNNVSDQGKWEPKSEEVDVSELMLGDEESGRLPRASGSAKDFVRGSINSRPFRPGGLDNSQTLNRVLPEGASNGEWVREILNGGPPQTIPPGFKQGLDLGAFKPYPCSWNVYKDASSLKSSSDEKLSELSLQFDDLFKKAWEDDVTHEQEEDVHLSEVESVALEAEVDKVEASGSMHEDEFSLDEVLSTKLEGLKPLLDASGAGGRQQKEAWARRGGSKEILDRFYELVPDMALQFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVTLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESETFLPQGLKAAKDAFKKKNSTAVGGGSGRYSGTSAGHDGTQVQKHENAARLKHGSSFSKTSRGYQNNGNGQNNWELRRAEASMWLKLINKLSKMSLLPVIIFCFSKNRCDISADKMTGTDLTSNSEKSEIRVFCDKSFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVLMCRDEIPEERDLKHVIVGNATRLQSQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMKELLMRKLNQPTKAIECIKGEPTIEEYYETYLEAEKYSSKISDAILQSSNAQQFLAPGRVIVVKSETVNDHLLGVIVKAPSANCKQYIVLVLRPDLPSPGENAPSRGSVQDKPSDFNQGFFVVPKSKRGFGDDYHTSVSARRGTGVINITLPHRGYVSGMSYEVRGVDRKEFQCICKSKIKIDQVGLLEDVSNAVYSKTVQMLLDLKSDGNKYPPPLDPVKDLKLKDVELVDTYRKWTKLLEKMTQNPCHGCIKLEEHMKLAEDIQKHKQEVTDLQYRISDEALQQMPDFQGRIDVLKEIGCIDDDFVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEAVALMSAFVFQQKNTSEPSLTTKLSEATHKLYNTAIELGQLQVQKGLSIDPEEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEVASNAIKRDIVFAASLYITGV 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g02193 1343 Pfam DSHCT (NUC185) domain 1166 1335 IPR012961 -
Accr3g02193 1343 Pfam rRNA-processing arch domain 839 1139 IPR025696 -
Accr3g02193 1343 MobiDBLite consensus disorder prediction 596 615 - -
Accr3g02193 1343 Pfam DEAD/DEAH box helicase 358 505 IPR011545 GO:0003676|GO:0005524
Accr3g02193 1343 MobiDBLite consensus disorder prediction 599 615 - -
Accr3g02193 1343 Gene3D - 818 879 - -
Accr3g02193 1343 Gene3D - 1121 1340 - -
Accr3g02193 1343 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 518 IPR014001 -
Accr3g02193 1343 FunFam Ski2 ATP-dependent RNA helicase 1115 1340 - -
Accr3g02193 1343 FunFam ATP-dependent RNA helicase SKI2 319 526 - -
Accr3g02193 1343 FunFam DExH-box ATP-dependent RNA helicase DExH11 527 817 - -
Accr3g02193 1343 Gene3D - 319 526 IPR027417 -
Accr3g02193 1343 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 141 1324 - -
Accr3g02193 1343 PIRSF SKI2 48 1340 IPR016438 GO:0003723|GO:0003724|GO:0006401
Accr3g02193 1343 Gene3D - 527 817 IPR027417 -
Accr3g02193 1343 SMART ultradead3 351 531 IPR014001 -
Accr3g02193 1343 SMART DSHCT_2 1162 1340 IPR012961 -
Accr3g02193 1343 Pfam Ski2 N-terminal region 79 218 IPR040801 -
Accr3g02193 1343 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 632 831 IPR001650 -
Accr3g02193 1343 FunFam DExH-box ATP-dependent RNA helicase DExH11 818 885 - -
Accr3g02193 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 798 IPR027417 -
Accr3g02193 1343 CDD SF2_C_Ski2 623 796 - -
Accr3g02193 1343 SMART helicmild6 698 784 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g02193 Accr-Chr3 40096322 40116698 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g02193 K12599 - gmx:100788432 2132.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g02193 3 40096322 40116698 Accr3g02193 3 40096322 40116698 ECH