Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01550 ATGGCCGCGCCGGAGACCGTGAATATGCAGCAGCCGAGCTTTCCCTCTAGGACAATGCCCAATTCAGCTCAGCCTTCGTTTTCACTTCCTTCAGTACAGCCTCAGGTCTCGGTTCCTGGTCCGTCTTCGTCTGCGCCTGGACCATCTACCTTAGCTCAGCTCACTTCGGCGGAACCTTCTGGCACTCGTATTCCAGAGCATTTGATGCACAAAAATAGGTTACAAGAGTATGCTCAAAGGTCAAACATGCCTCTACCTATTTATCACACTCCTAATGAAGGATCTGGTCATGCTCCTAGATTTAGGTCAACGGTGTTGGTAGATGGGAAGTATTATACTTCTCAAAATGTTTTTTGTGTCCGAAAAGCTGCTGAGCAAGATGTTGCCAAACTTGCGTATGAGCAGATAGTGACAAAGATAAAAAATGAAGGGCTTCCCGATATTTTTGAGAAAACTATGTTTTTCAAATCCATCTTAAATGAATTTGCTGCGAAGATGAATCTGGATAAAGTTACATACCACACTGTTCAGCAGGAAGGACATCTGTTTTTTGTAGCATCTTTGGTTTTCAATGGCAAATCCTACATTGGTGATCCAGCCAGAAGCAAAAAGGAGGCTGAGCAATTGGCTGCACGAACTGCCATTCTTTCGAATCTAAGTGATTCTAGGTTTGGAACACGCCTTTCTGAGGTAATAAACTCTAAATTCAAATTTTGTGCTGCAATCAACATTGTGAAGGACTCACAACATACAAGTACTGTTTCTATGGCTCACTCGGGACATGTGTCTGGTAGTGCAACTCCTGTGGCGGTTAATAATAATGAAAGTAGCAACAAATTTGAGGTTGCACTTCCTGAGCCCTCCTCTAGAGGGCTTCAACAAGAATTCCAGATGTCAAAACAAGAAAAGTGCCCTGAGGAGTCCAGAGTCTCAGATCTGTCTCAGCAAGTAGGTGAACCACAGCATCTTGATGATGGTTCAAGTTTGAAGAAGCGCAAAAAGAACAAGAGAAAGGCTAATAAGAAGGCCCGGGTGGATTCTCTGCTTCCGGTTGCTGCATTTCCGCCCAGCCAAGCCCCTCCTGCTGTTACTCCTTTCCCACTCAGCCAAGCCCCTCCTGTGACATTGCCATTTATTTTCAGCCAACCTAGATGTTCAGTCATGCATTAA 1170 0.447 MAAPETVNMQQPSFPSRTMPNSAQPSFSLPSVQPQVSVPGPSSSAPGPSTLAQLTSAEPSGTRIPEHLMHKNRLQEYAQRSNMPLPIYHTPNEGSGHAPRFRSTVLVDGKYYTSQNVFCVRKAAEQDVAKLAYEQIVTKIKNEGLPDIFEKTMFFKSILNEFAAKMNLDKVTYHTVQQEGHLFFVASLVFNGKSYIGDPARSKKEAEQLAARTAILSNLSDSRFGTRLSEVINSKFKFCAAINIVKDSQHTSTVSMAHSGHVSGSATPVAVNNNESSNKFEVALPEPSSRGLQQEFQMSKQEKCPEESRVSDLSQQVGEPQHLDDGSSLKKRKKNKRKANKKARVDSLLPVAAFPPSQAPPAVTPFPLSQAPPVTLPFIFSQPRCSVMH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01550 389 SUPERFAMILY dsRNA-binding domain-like 149 215 - -
Accr3g01550 389 Pfam Double-stranded RNA binding motif 71 135 IPR014720 -
Accr3g01550 389 Pfam Double-stranded RNA binding motif 156 215 IPR014720 -
Accr3g01550 389 CDD DSRM_SF 160 215 - -
Accr3g01550 389 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 69 138 IPR014720 -
Accr3g01550 389 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 154 215 IPR014720 -
Accr3g01550 389 PANTHER RIBONUCLEASE III 62 341 IPR011907 GO:0003723|GO:0004525|GO:0006364
Accr3g01550 389 MobiDBLite consensus disorder prediction 1 65 - -
Accr3g01550 389 MobiDBLite consensus disorder prediction 299 347 - -
Accr3g01550 389 MobiDBLite consensus disorder prediction 1 60 - -
Accr3g01550 389 SMART DRBM_3 155 219 IPR014720 -
Accr3g01550 389 SMART DRBM_3 70 137 IPR014720 -
Accr3g01550 389 SUPERFAMILY dsRNA-binding domain-like 70 136 - -
Accr3g01550 389 Gene3D - 139 225 - -
Accr3g01550 389 Gene3D - 55 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01550 Accr-Chr3 18457941 18461718 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01550 - - pcin:129303002 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01550 3 18457941 18461718 Accr3g01550 3 18457941 18461718 CCT
Accr3g01550 3 18457941 18461718 Accr3g01550 3 18457941 18461718 ECH