LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g01062	ATGGCTTCCCTCCATTTCCTCTTCGTATTTTGCCTCTGCCTTTGCTTCTTTCCCCTTTCCTCCTCCGCTGCTCTGCTCTTTCAGGGTTTCAACTGGGAATCAAGTAACAAAGGAGGATGGTACAACTCCCTCAAGAACTCCATCTCTGACCTAGCCAGTGTCGGAATCACCCATGTTTGGCTCCCTCCTCCTTCTCAATCCGTTTCTCCTGAGGGATATCTCCCGGGAAGGCTATATGATCTGGATGCCTCCAAATATGGTTCCAAGGATGAATTGAAGTCACTGATCGCAGCTTTCCACCAGAAGGGAATTAAGTGCTTGGCTGATATAGTCATCAACCACAGAACTGCAGAGAGGAAGGACAGAAGAGGAATCTACTGCATCTTCGAAGGTGGCACCCCTGATTCGCGTCTCGATTGGGGTCCATCGTTCATCTGCAGAGACGACATCGCTTATTCTGATGGCACCGGAAATCTCGATAGCGGAGAGCCATTCGAACCCGCGCCGGACATCGACCATCTCAATCCTCAAGTTCAGTCAGAGCTCTCAGATTGGATGAATTGGTTGAAGACAGAAATAGGGTTTGATGGATGGCGTTTTGATTTTGTAAAGGGCTATGCTCCCAATATCACTAAAATTTATATGCAACGAACCTCACCAGACTTCGCCGTTGGAGAAAAATGGGACTCTCTGTCTTACGGGCAGGACGGGAAGCCTGCGTATAACCAAGACGCTCATCGTGGTGCGTTGGTGAATTGGGTGGAAGAGGCCGGCGGAGCTGTCACCGCCTTTGATTTCACAACCAAAGGGATTCTTCAGGCCGCCGTACAAGGGGAGCTATGGAGGTTGATTGACCCGACTGGGAAGCCGCCGGGAATGATCGGGACAAAGCCAGAAAATGCGGTGACCTTCATTGATAATCATGACACAGGTTCCACACAGAAACTTTGGCCTTTCCCTTCAGACAAAGTCATGCAGGGATACGCATACATTTTAACTCATGCCGGAACACCATCAATATTCTACGACCACTTGGTAGATTGGGGGCTGAAGGAGGAGATAGGGAAGTTGAGTGAGATAAGGAGGAGGAACGGGATCAATGAGAGAAGCAGTGTGAAGATCTTAGCTTTTGAAGCAGATCTGTATATGGCAGAGATGGATGGCAAGGTCATCATGAAGATTGGGCCTAAGTGGGATCTTGGAGGACGCGTTCCTTCTAATTTTCGACTCGCCACTTCGGGCCAAGACTATGCTGTGTGGGAGAAACCTTCTCAACAGTATGTTGTATAA	1290	0.4899	MASLHFLFVFCLCLCFFPLSSSAALLFQGFNWESSNKGGWYNSLKNSISDLASVGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYGSKDELKSLIAAFHQKGIKCLADIVINHRTAERKDRRGIYCIFEGGTPDSRLDWGPSFICRDDIAYSDGTGNLDSGEPFEPAPDIDHLNPQVQSELSDWMNWLKTEIGFDGWRFDFVKGYAPNITKIYMQRTSPDFAVGEKWDSLSYGQDGKPAYNQDAHRGALVNWVEEAGGAVTAFDFTTKGILQAAVQGELWRLIDPTGKPPGMIGTKPENAVTFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHAGTPSIFYDHLVDWGLKEEIGKLSEIRRRNGINERSSVKILAFEADLYMAEMDGKVIMKIGPKWDLGGRVPSNFRLATSGQDYAVWEKPSQQYVV	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g01062	429	SUPERFAMILY	Glycosyl hydrolase domain	366	422	-	-
	Accr3g01062	429	Gene3D	-	366	422	IPR013780	-
	Accr3g01062	429	PANTHER	ALPHA-AMYLASE	26	422	-	-
	Accr3g01062	429	PIRSF	Alpha-amylase_plant	1	423	IPR013775	GO:0004556\|GO:0005509\|GO:0005975
	Accr3g01062	429	Pfam	Alpha amylase, catalytic domain	51	208	IPR006047	GO:0005975
	Accr3g01062	429	CDD	AmyAc_arch_bac_plant_AmyA	26	372	-	-
	Accr3g01062	429	SMART	alpha-amyl_c2	362	422	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Accr3g01062	429	SUPERFAMILY	(Trans)glycosidases	26	355	IPR017853	-
	Accr3g01062	429	PRINTS	Alpha-amylase signature	103	114	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Accr3g01062	429	PRINTS	Alpha-amylase signature	195	206	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Accr3g01062	429	PRINTS	Alpha-amylase signature	299	311	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Accr3g01062	429	Pfam	Alpha-amylase C-terminal beta-sheet domain	363	421	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Accr3g01062	429	SMART	aamy	24	361	IPR006047	GO:0005975
	Accr3g01062	429	Gene3D	Glycosidases	25	365	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g01062	Accr-Chr3	12020609	12022246	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g01062	1	422	Glycoside Hydrolase	AT4G25000	69.249	0.0	583

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g01062	K01176		-	gmx:100815664	717.998

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr3g01062	3	12020609	12022246	Accr3g01062	3	12020609	12022246	ECH