Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00939 ATGGCTTCTCCTCCTCCATCATATCAGACAGATCTTCCTCTTCCCTCTGCCTCTCAACCTGGTGACAAGTTTCTGGATCATGAAGATCGTTCAACTCCTGTTCCAATTCATGTTGTCACCAGTGCATCTCAACTTCCTGTTGAATTCCTCGAACCCTCACCTCAAGAGCAACTCGTCATTGGTTTCGATTGTGAGGGCGTCGACCTGTGTCGGACTGGGGCTCTATGTATAATGCAGCTTGCATTTCCAGATGCTATATACCTGGTTGATGCAATTGAAGGGGGAGAGACGCTTATTAGAGCCTGCAAGCCTGCACTCGAATCTAGTTACATAACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTGTATTTTCAATTTGGCATCAAGTTGAACAACGTGGTGGATACCCAGATTGCTTATTCACTGATAAAGGAGCAAGAAGGGCGGAAGAGATTGACAGATGACTACATTTCATTTGTCGGCCTCCTTGCAGATCCATATTATTGTGGTATATCATATGATGAGAAAGAAGAAGTTCGGATCCTTCTTCGGCAGGACCCCAAGTTTTGGAAATATAGACCATTATCTGAACTAATGGTCCGTGCAGCTGCTGATGATGTTCGCTTTCTTCTCTACATTTACCACCGGATGATGGAGAAATTAAATGAGCGATCACTATGGTATCTTGCAGTTCGTGGTGCCCTCAATTGCCGATGTTTTTGTGTCAATGACAATGATTATGCTGACTGGCCATCTCTACCTCCTATTCCAGATAAGTTGACAGTGGATGGAGATGCTCCTGAGGAAGAAATCCTCTCGGTTCTTGATGTTCCCAGTGGAAAGATGGGACGCATTATTGGGAGAAGAGGGGCGACAATCATGTCAATCAAGGAGTCCTGCAATGCGGAGATTCTAATTGGAGGTGCAAAGGGCCCACCTGACAAGGTTTTTATCGTGGGACCAGTTAAGCAAGTGAGGAAAGCAGAGGCCTTGCTGAGGGGTAGATTGTTGGATGTGTACTGA 1032 0.4545 MASPPPSYQTDLPLPSASQPGDKFLDHEDRSTPVPIHVVTSASQLPVEFLEPSPQEQLVIGFDCEGVDLCRTGALCIMQLAFPDAIYLVDAIEGGETLIRACKPALESSYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIKEQEGRKRLTDDYISFVGLLADPYYCGISYDEKEEVRILLRQDPKFWKYRPLSELMVRAAADDVRFLLYIYHRMMEKLNERSLWYLAVRGALNCRCFCVNDNDYADWPSLPPIPDKLTVDGDAPEEEILSVLDVPSGKMGRIIGRRGATIMSIKESCNAEILIGGAKGPPDKVFIVGPVKQVRKAEALLRGRLLDVY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00939 343 SUPERFAMILY Ribonuclease H-like 30 248 IPR012337 -
Accr3g00939 343 SMART kh_6 272 340 IPR004087 GO:0003676
Accr3g00939 343 MobiDBLite consensus disorder prediction 1 27 - -
Accr3g00939 343 Gene3D K Homology domain, type 1 262 339 IPR036612 GO:0003723
Accr3g00939 343 CDD KH-I 277 336 - -
Accr3g00939 343 Pfam KH domain 278 336 IPR004088 GO:0003723
Accr3g00939 343 ProSiteProfiles Type-1 KH domain profile. 273 335 - -
Accr3g00939 343 CDD Egl_like_exo 49 244 - -
Accr3g00939 343 PANTHER EGALITARIAN, ISOFORM B 17 340 - -
Accr3g00939 343 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 268 341 IPR036612 GO:0003723
Accr3g00939 343 SMART 35exoneu6 36 225 IPR002562 GO:0003676|GO:0006139|GO:0008408
Accr3g00939 343 Gene3D - 4 239 IPR036397 GO:0003676
Accr3g00939 343 Pfam 3'-5' exonuclease 57 224 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00939 Accr-Chr3 10460649 10465936 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00939 K18740 - cave:132185039 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00939 3 10460649 10465936 Accr3g00939 3 10460649 10465936 ECH