Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00780 ATGGCGGCTACGCTTAGCAGGGACCTTATCTTCCTGATTTTGCAGTTCCTTGACGAAGAAAAATTTAAAGATACCCTTCACACCTTGGAACAAGAATCAGCATTGTTCTTCAACTTCAACTATTTCAAAGAGCAGGTGCTCAATGGAAACTGGGATGAAGCTGAAAGGTATCTTCAGGGATTCACCAGATTTGACGAGAATAAGTTTTCGACCAAGATATATTTTGAACTCCGCAAGCAGAAGTACCTGGAGGCCTTGGATAAGCCTGACCGTGCGAGTGCTGTGAATATCCTAATGAAGGATCTGAAGGTGTTTTCCTCTTTTGATGAAGATTTGTTCAAGGAAATCACCCACCTTATTACTTTGGATAATTTTAGGGAAAATAGCATCCTCTCTAATTACAGGGATATGAAAACTGCCAGAGCTAACATGATGCCAGAACTCAGGAGGCTTATTGAGGCAAATCCTCTTCTTCGTGGTAAAACGGAGTTCCCTAACCTAGGAGGTTCAAGATTGAGAAGTCTCGTTTATCAAAGCACAAATTGGCAACATTCACTTTGTGAAAACCCGGCACCAAATCCTGAACGAGGAACTCTCTTTGTGGATCATAGTTGTAGAAATGCAAGTGATTTGGCACAAATGTCAGCAAGCAAACAATTTGTGGCTTCTAACCCAAAACTTGAAGGCTTTCATCCAATAGGTGGAGCCACTGGGGCGAGTAATCAACTTCCATTTCATCCCCAACCACCGTCACTTCACACTCCTCCTATCAACACATGGATGCCTAATGCCTCAAACATTATGCGTCCAGTACTTCCCGGAACCATCAATTATAGTGGCCTGACATATCCAGGAGCAATGATGTCTGGGATGCCAAATAAGATCATTCCTTCTGCTGTCTATCCAACTCCAAGCCACAACCCTGCAGTTATCCAATCCCATGACTTGCCAAAGACTGTTGTACGGACACTGACTATGTGGTCAAACCCCACAAGCATGGATTTTCATCCTATCCATCAAGTGCTACTTCTAGTTGGAACGAGCTTGGGAGAGATAAGTTTGTGGGATGTTCCTTCGATGGAGAGGTTGTTCGCAAGAAATTTTCAAGTATGGGATATTGGATCAAGTTCAATGACTTTAAAGGCATCACTAGTTAAAGATCCATCTATCTCAGTAAGTCGTACATTGTGGGACTCTAAAGGCTCATTATTCGGAGTTGCATATTCCAAAAGCATGATTCAGTTATACTCCTACCATGGCACTAACGACGTACGACCACATGTGGAGATTGAAGCTCATGTTGGAAGTGTAAATGATCTGGCATTTTGCAACCCCACAACAAACCTCTGTTTGCTAACCTGCGGTGATGATAGAACCATTAAGCTTTGGGATGCTACGACTGGTGTAAGAGTTTGCACTTTTGAAGGCCATGATAGTGCTGTATATTCTGTCTGCCCACATTACAAGGATAATATGCATTTTCTATTTTCCACATCAGTGGATGGAAAGATTAAAGCGTGGGTATATGACAACTTTACCTCAAAGCTTGACTTTGATGCTCCTAGTCGATCCTGCGCAACAGTGAGTTATAGTGCTGATGGGAGCAGGCTATTTTCCTGTGGAACCAATAGAGAAGGAGAGTCACATATTGTTGAATGGAACGAAAAAGAAGGCACCATCAAAAGATCTTACCAGGGACTTCACAAACAGTCTTTAGCTATCATTCAATTTGACATGACCAAGAATCAGTTGTTGGCGGCTGGTGATGACTGTTCAATAAAATTTTGGGATATGGATAACGCCAATCTTTTGACAAGTACTGATGCGGAAGGAGGACTACCAGCTAGTCCTCGAATCCGATTCAACAAGGATGGCACCTTATTGGCTGTTACTGCTAATGATAACAAAGTAAAAGTGCTAGCAACAATAAATGGTCAGCACTTGATGTGTCATATGAAGAATGGTGAGGCAAGAACCTTAGAAGATGTAAAACCTAAACTGACAAAGGCATTGGTCCCACCGAAGACCTGGAAGTTCACTGAGATTAATGACGCGTCTCAATTTAGGTCACTAAGACTTGCAACCAGCATCAGGGCAGAAAAGGTCTCAAGATTGATGTACACTAGCACAGGAAGTGGAATCTTGGGATTAGCATCAAATGCCATCCATTTATTCTGGAAGTGGCCGCGCAACGATCTTAATCCAAGTGGCAAGGCAACTACCAGGGTTACTCCTTGCGTTGTTCAGCCAACAACAGGCGCAGTAATGGCCAATGACTTAACTGACAGTATAGCCGGAGAAGCTGTGCCATGCTTTGCTTTGTCCAAGAATGAGTCCTATCTTATGTCAGCATCTGGAGGAAAGGTTACTTTGTTCAATATGCTGACTTTCCAGATAATGACAATTTGTATGTCCCCACCACCAGCAGCAACATCTCTTGCTTTCCATCCTATGGACAATAATATTATTGCTGTTGGCACAGATGATAATTCAATCCATATATACAACGTTCGTACAGATGAGGTAAGCCACAGGTTAAGGGGTCACTCCAAAAAAGTTACTGGCCTTGCTTTCTCTCATGTTCAGAATCTACTTATTTCTTCTGGAGAAGATGCTCAGATTATAAGATGGAGCACAAATACTTGGGAGAAGGAGAATAGTGCCTTTCTGCAGATTCCAGAAAGAAGGACACCCAGGACAAACCCTGCTAAGTCGGACATCTTTCTTCAGTTTCATCAGGATCAGGCACATTTCCTTGTTGCACATGAGAGTCAGATAGCTACATATGAGACATCTAAGCTTCAATGTGTGAAACAATGGGCTGTAGGAGAGTTCATGGCACCAATTTCCCATGCAACGTTCTCGTCCAATTGCCAGCTAATCTATACCAGCTTCATAGATGGAGTAATACTAATATTTAGTACTTCAAATCTCCAGCTGCAATGCCAGATTAATCCCAGTGCTTATCTTGGTTCTTCTTATGTCAGAGGTTGTGGCCTATACCCTTCTGTGATAGCGGCGAATCCACAGGATCCAAACCAGATTGCCCTAGGATTAACAGATGGTGGGGTTCAAGTTATGGAGCCACTTGAATCTGAAGGCAAATGGGGAGTGTCTTCACCAGTTGAGAATGGATCTTCCAGCAATACCTTGGCTTCCTGCATCTCAATTGGTTGA 3177 0.4284 MAATLSRDLIFLILQFLDEEKFKDTLHTLEQESALFFNFNYFKEQVLNGNWDEAERYLQGFTRFDENKFSTKIYFELRKQKYLEALDKPDRASAVNILMKDLKVFSSFDEDLFKEITHLITLDNFRENSILSNYRDMKTARANMMPELRRLIEANPLLRGKTEFPNLGGSRLRSLVYQSTNWQHSLCENPAPNPERGTLFVDHSCRNASDLAQMSASKQFVASNPKLEGFHPIGGATGASNQLPFHPQPPSLHTPPINTWMPNASNIMRPVLPGTINYSGLTYPGAMMSGMPNKIIPSAVYPTPSHNPAVIQSHDLPKTVVRTLTMWSNPTSMDFHPIHQVLLLVGTSLGEISLWDVPSMERLFARNFQVWDIGSSSMTLKASLVKDPSISVSRTLWDSKGSLFGVAYSKSMIQLYSYHGTNDVRPHVEIEAHVGSVNDLAFCNPTTNLCLLTCGDDRTIKLWDATTGVRVCTFEGHDSAVYSVCPHYKDNMHFLFSTSVDGKIKAWVYDNFTSKLDFDAPSRSCATVSYSADGSRLFSCGTNREGESHIVEWNEKEGTIKRSYQGLHKQSLAIIQFDMTKNQLLAAGDDCSIKFWDMDNANLLTSTDAEGGLPASPRIRFNKDGTLLAVTANDNKVKVLATINGQHLMCHMKNGEARTLEDVKPKLTKALVPPKTWKFTEINDASQFRSLRLATSIRAEKVSRLMYTSTGSGILGLASNAIHLFWKWPRNDLNPSGKATTRVTPCVVQPTTGAVMANDLTDSIAGEAVPCFALSKNESYLMSASGGKVTLFNMLTFQIMTICMSPPPAATSLAFHPMDNNIIAVGTDDNSIHIYNVRTDEVSHRLRGHSKKVTGLAFSHVQNLLISSGEDAQIIRWSTNTWEKENSAFLQIPERRTPRTNPAKSDIFLQFHQDQAHFLVAHESQIATYETSKLQCVKQWAVGEFMAPISHATFSSNCQLIYTSFIDGVILIFSTSNLQLQCQINPSAYLGSSYVRGCGLYPSVIAANPQDPNQIALGLTDGGVQVMEPLESEGKWGVSSPVENGSSSNTLASCISIG 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00780 1058 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Accr3g00780 1058 Gene3D - 550 653 IPR015943 GO:0005515
Accr3g00780 1058 Pfam LisH-like dimerisation domain 6 33 - -
Accr3g00780 1058 SMART ctlh 35 93 IPR006595 -
Accr3g00780 1058 SUPERFAMILY DPP6 N-terminal domain-like 760 1037 - -
Accr3g00780 1058 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 4 1047 IPR027728 GO:0006355
Accr3g00780 1058 ProSitePatterns Trp-Asp (WD) repeats signature. 584 598 IPR019775 -
Accr3g00780 1058 Gene3D - 756 1054 IPR015943 GO:0005515
Accr3g00780 1058 SMART Lish 5 37 IPR006594 GO:0005515
Accr3g00780 1058 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Accr3g00780 1058 Gene3D - 306 549 IPR015943 GO:0005515
Accr3g00780 1058 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 846 881 - -
Accr3g00780 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 606 IPR001680 GO:0005515
Accr3g00780 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 846 887 IPR001680 GO:0005515
Accr3g00780 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 473 IPR001680 GO:0005515
Accr3g00780 1058 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 311 883 IPR011047 -
Accr3g00780 1058 SMART WD40_4 933 974 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 757 793 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 467 508 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 423 464 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 511 554 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 317 356 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 557 597 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 796 836 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 839 878 IPR001680 GO:0005515
Accr3g00780 1058 SMART WD40_4 606 641 IPR001680 GO:0005515
Accr3g00780 1058 ProSitePatterns Trp-Asp (WD) repeats signature. 451 465 IPR019775 -
Accr3g00780 1058 Pfam WD domain, G-beta repeat 430 464 IPR001680 GO:0005515
Accr3g00780 1058 Pfam WD domain, G-beta repeat 471 507 IPR001680 GO:0005515
Accr3g00780 1058 Pfam WD domain, G-beta repeat 843 875 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00780 Accr-Chr3 8583979 8590316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00780 429 638 Miscellaneous Gene Families AT5G08390 22.381 8.50e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00780 - - qsu:111985644 1331.62