Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00657 ATGCTCGAAATTCACATTCTCTCCTACCTCACTCCACTTCAATCTAACTCAAAGCCAATTTCTTCCTTTCTTATCACCTCTTCTTCTTCTCCAACTCGGCGTCGCTTGACTAGCACCGCTAATCCGCGTAAAAAGAACCTTAAGTGCCTTACTTCCCGCATCGTTCAACTCACCGGCCGAAGGCAGCTTCACCAGATTTTTGAAGAGATTGAAATTGCTGAGAAACGTTATGGGAAGCTGAACACTATTGTCATGAACGCAGTCATGCAGGCCTGTGTTCATTGCGGTGATATTGATTCAGCTCTTAGGATATTTAATGAGATGACGAAACCGGGGAGCTGTGGTGCGGATACTGTCACGTATGCCACGCTTTTGAAGGGATTGGGCGAGTTGCGGAAAGTTGATGAAGCCTTTCAATTGCTTGAATCCGTGGAAAAAGGTACTGCACCTGGAAATCCAAAGTTGTCAGCGTCATTGATCTTTGGTCTGCTAAATGCCATAATCGAGGCAGGAGACTTACGTCGTGCAAATGGCCTCCTTGCTCGTTATGGTTATGTATTTCGTGAAGGCGGCAGCTTCTCGGTCTCAGTATACAACTTACTCATAAAGGGGTATGTCACCGCAGGTTTTCCTCTAGACGCTATAAACTTGCACAATGAAATGTTACGTCATGGAATGAAGCCTGACAGGCTCACCTACAACACTCTCATATTAGCATGTGTCAAGAGTCAAAACATGGATATTGCAGTGCAATTTTTTGAAAACATGAAGGATGAAGCACAGAAACCTACTCACAATGACGTTTTGCCAGATATCGTCACATATACAACACTGCTCAAGGGTTTTGGGCAGGCCAAAGATCTCTCGTCTGTCCTGAGGATAGTGCTGGAAATGAAATCATGTCAGGAATTGTATATTGACCGAACAGCTTACACTGCAATAATTGATGCTTTATTAAACTGTGGCTCAATTAAGGGTGCGCAATGCATCTTTGGAGAAATACTGAAGCTTGCTGGTTGGAATCCAGAGTTGAAGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTTGCTTCTAGAGGAGAATACAATGTAGTCAAAAACTTGCATTGGCGGCTTTTACCAGATTCTGCAGGAACCATCTTGCCAGTTGCTCAAGAAGAAGCTGATCATCTTCTCATGGAAGCAGCACTGAATAATGGTCAGGTTGATGTTGCCATTGAAACTCTTGTTAATATTGCTTCAAAATGGAAGGGTATATCATGGACAAGTCGGGGAGGCATGGCAACTTTGCGCGTTGAGGCCACATTGGGATTCTCAAAGTCCATATTCAGTCCTTACCTACTTCCACAGGTTTCACCTGTTGAACCAGTTGAGAGATTCATGTTGCCATTTGAGGCAACAGGACCACTAAAAGGCACTGTCCGATTGAAGGAAGTAGTTATGCGTTTCTCTGATGATGCAATTGTTCCAATAGTAGACGATTGGGGCAGCTGTATAGGATTGGTGCACCGTGAAGACTGTGCTCAGTTGGACTTGAATGCTTCACTTTCAACAATTATGAGAAGCTCTCCTCCCACTGTTACAACTACAACATCAGTTGGTCACGTTGTTGATTTGATTTTGGAAAAGGGCTACCCAATGGTTATCATTGTAAAGTACACCAGCTCATATGGTAGTATTTATAGCTCAAGGGCAGTTGGAGTTTTTACATCGCAACAATTGTGTAGGCTTATCACACCTGCCTTTGTATCACTAGGGCCAAAACTTTCAATCTTTAGAAGATAA 1791 0.4355 MLEIHILSYLTPLQSNSKPISSFLITSSSSPTRRRLTSTANPRKKNLKCLTSRIVQLTGRRQLHQIFEEIEIAEKRYGKLNTIVMNAVMQACVHCGDIDSALRIFNEMTKPGSCGADTVTYATLLKGLGELRKVDEAFQLLESVEKGTAPGNPKLSASLIFGLLNAIIEAGDLRRANGLLARYGYVFREGGSFSVSVYNLLIKGYVTAGFPLDAINLHNEMLRHGMKPDRLTYNTLILACVKSQNMDIAVQFFENMKDEAQKPTHNDVLPDIVTYTTLLKGFGQAKDLSSVLRIVLEMKSCQELYIDRTAYTAIIDALLNCGSIKGAQCIFGEILKLAGWNPELKPKPHLYLSMMRAFASRGEYNVVKNLHWRLLPDSAGTILPVAQEEADHLLMEAALNNGQVDVAIETLVNIASKWKGISWTSRGGMATLRVEATLGFSKSIFSPYLLPQVSPVEPVERFMLPFEATGPLKGTVRLKEVVMRFSDDAIVPIVDDWGSCIGLVHREDCAQLDLNASLSTIMRSSPPTVTTTTSVGHVVDLILEKGYPMVIIVKYTSSYGSIYSSRAVGVFTSQQLCRLITPAFVSLGPKLSIFRR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00657 596 SUPERFAMILY CBS-domain pair 473 571 IPR046342 -
Accr3g00657 596 Gene3D Tetratricopeptide repeat domain 37 148 IPR011990 GO:0005515
Accr3g00657 596 Gene3D Tetratricopeptide repeat domain 156 263 IPR011990 GO:0005515
Accr3g00657 596 ProSiteProfiles CBS domain profile. 522 587 IPR000644 -
Accr3g00657 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Accr3g00657 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Accr3g00657 596 Gene3D Tetratricopeptide repeat domain 264 443 IPR011990 GO:0005515
Accr3g00657 596 Gene3D - 472 579 IPR046342 -
Accr3g00657 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 147 IPR002885 -
Accr3g00657 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Accr3g00657 596 Pfam PPR repeat 310 336 IPR002885 -
Accr3g00657 596 NCBIfam pentatricopeptide repeat 232 259 IPR002885 -
Accr3g00657 596 NCBIfam pentatricopeptide repeat 119 143 IPR002885 -
Accr3g00657 596 NCBIfam pentatricopeptide repeat 85 109 IPR002885 -
Accr3g00657 596 NCBIfam pentatricopeptide repeat 273 301 IPR002885 -
Accr3g00657 596 NCBIfam pentatricopeptide repeat 197 229 IPR002885 -
Accr3g00657 596 PANTHER OS09G0431600 PROTEIN 20 582 IPR044781 -
Accr3g00657 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Accr3g00657 596 Pfam PPR repeat family 81 128 IPR002885 -
Accr3g00657 596 Pfam PPR repeat family 195 242 IPR002885 -
Accr3g00657 596 Pfam Pentatricopeptide repeat domain 266 299 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00657 Accr-Chr3 7379927 7384329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00657 81 370 Glycosyltransferase AT1G05670 23.824 3.74e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00657 - - pcin:129299111 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00657 3 7379927 7384329 Accr3g00657 3 7379927 7384329 ECH